Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88286 | Canola | cytosol, endoplasmic reticulum, nucleus | 78.48 | 85.87 |
| CDX87591 | Canola | nucleus | 79.47 | 85.71 |
| Bra015738.1-P | Field mustard | nucleus | 80.13 | 84.03 |
| CDY20404 | Canola | nucleus | 75.17 | 83.76 |
| CDY45983 | Canola | nucleus | 78.48 | 82.29 |
| Bra008262.1-P | Field mustard | nucleus | 77.81 | 81.88 |
| Bra003717.1-P | Field mustard | nucleus | 77.48 | 81.53 |
| CDX68095 | Canola | cytosol | 72.85 | 81.48 |
| CDX85952 | Canola | cytosol | 72.19 | 80.15 |
| AT1G20900.1 | Thale cress | nucleus | 71.85 | 69.77 |
| KRH51551 | Soybean | plastid | 41.06 | 60.78 |
| Solyc04g082810.2.1 | Tomato | cytosol, nucleus, peroxisome | 47.68 | 58.78 |
| PGSC0003DMT400025705 | Potato | plastid | 49.01 | 56.92 |
| GSMUA_Achr9P12320_001 | Banana | plastid | 45.03 | 48.4 |
| Zm00001d051620_P001 | Maize | plastid | 50.66 | 48.27 |
| TraesCS6D01G258400.1 | Wheat | plastid | 51.66 | 47.42 |
| TraesCS6B01G306100.1 | Wheat | plastid | 51.66 | 47.42 |
| TraesCS6A01G277700.1 | Wheat | plastid | 51.32 | 47.4 |
| Os02t0713700-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 52.65 | 47.32 |
| EES05630 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 51.32 | 47.26 |
| Zm00001d017825_P001 | Maize | plastid | 50.66 | 47.22 |
| HORVU6Hr1G070090.1 | Barley | plastid | 51.66 | 47.13 |
| VIT_18s0122g00590.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 47.68 | 45.57 |
| AT4G35390.1 | Thale cress | cytosol | 44.7 | 45.15 |
| KXG19929 | Sorghum | nucleus | 46.03 | 43.71 |
| Zm00001d045928_P001 | Maize | nucleus | 43.38 | 42.81 |
| AT2G42940.1 | Thale cress | plastid | 36.42 | 42.8 |
| AT4G17800.1 | Thale cress | cytosol | 41.06 | 42.47 |
| AT2G35270.1 | Thale cress | nucleus | 40.07 | 42.46 |
| Os06t0326900-01 | Rice | nucleus | 45.03 | 42.24 |
| HORVU7Hr1G046930.1 | Barley | cytosol, nucleus, peroxisome | 44.04 | 42.09 |
| TraesCS7B01G193900.1 | Wheat | cytosol, nucleus, peroxisome | 44.7 | 41.93 |
| AT3G04570.1 | Thale cress | cytosol, mitochondrion, peroxisome | 43.71 | 41.9 |
| AT4G14465.1 | Thale cress | cytosol, nucleus, plastid | 38.74 | 41.64 |
| AT3G60870.1 | Thale cress | nucleus | 36.42 | 41.51 |
| TraesCS7D01G228800.1 | Wheat | nucleus | 43.71 | 41.51 |
| TraesCS7A01G225700.1 | Wheat | nucleus | 44.37 | 41.49 |
| Zm00001d046696_P001 | Maize | cytosol, nucleus, peroxisome | 35.43 | 39.48 |
| EER88668 | Sorghum | cytosol | 34.77 | 38.89 |
| AT2G45430.1 | Thale cress | nucleus | 40.73 | 38.8 |
| AT3G55560.1 | Thale cress | plastid | 38.74 | 37.74 |
| TraesCS7B01G297300.1 | Wheat | cytosol | 36.42 | 37.67 |
| TraesCS7A01G395400.1 | Wheat | cytosol | 35.76 | 37.37 |
| AT1G14490.2 | Thale cress | plastid | 26.49 | 35.56 |
| AT4G22810.1 | Thale cress | nucleus | 38.08 | 35.49 |
| HORVU7Hr1G093230.2 | Barley | cytosol | 34.44 | 34.32 |
| AT4G12050.1 | Thale cress | cytosol, nucleus, plastid | 38.08 | 33.92 |
| AT5G49700.1 | Thale cress | nucleus | 30.79 | 33.7 |
Protein Annotations
| Gene3D:3.30.1330.80 | MapMan:35.1 | EntrezGene:843983 | UniProt:A0A178WLH3 | ProteinID:AAG51949.1 | ProteinID:AEE35850.1 |
| InterPro:AT-hook_nuclear | ArrayExpress:AT1G76500 | EnsemblPlantsGene:AT1G76500 | RefSeq:AT1G76500 | TAIR:AT1G76500 | RefSeq:AT1G76500-TAIR-G |
| EnsemblPlants:AT1G76500.1 | TAIR:AT1G76500.1 | EMBL:BR000365 | EMBL:BX817317 | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003680 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 |
| GO:GO:0009640 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0010228 | GO:GO:0043621 |
| InterPro:IPR005175 | RefSeq:NP_177776.1 | ProteinID:OAP18761.1 | PFAM:PF03479 | PIRSF:PIRSF016021 | PO:PO:0000037 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025195 | InterPro:PPC_dom | PFscan:PS51742 | PANTHER:PTHR31100 |
| PANTHER:PTHR31100:SF43 | UniProt:Q9C9K7 | Symbol:SOB3 | SUPFAM:SSF117856 | UniParc:UPI00000A0BE5 | SEG:seg |
Description
AHL29AT-hook motif nuclear-localized protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K7]
Coordinates
chr1:+:28704963..28706691
Molecular Weight (calculated)
30616.6 Da
IEP (calculated)
6.515
GRAVY (calculated)
-0.482
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGYDQSGG ASRYFHNLFR PELHHQLQPQ PQLHPLPQPQ PQPQPQQQNS DDESDSNKDP GSDPVTSGST GKRPRGRPPG SKNKPKPPVI VTRDSPNVLR
101: SHVLEVSSGA DIVESVTTYA RRRGRGVSIL SGNGTVANVS LRQPATTAAH GANGGTGGVV ALHGRFEILS LTGTVLPPPA PPGSGGLSIF LSGVQGQVIG
201: GNVVAPLVAS GPVILMAASF SNATFERLPL EDEGGEGGEG GEVGEGGGGE GGPPPATSSS PPSGAGQGQL RGNMSGYDQF AGDPHLLGWG AAAAAAPPRP
301: AF
101: SHVLEVSSGA DIVESVTTYA RRRGRGVSIL SGNGTVANVS LRQPATTAAH GANGGTGGVV ALHGRFEILS LTGTVLPPPA PPGSGGLSIF LSGVQGQVIG
201: GNVVAPLVAS GPVILMAASF SNATFERLPL EDEGGEGGEG GEVGEGGGGE GGPPPATSSS PPSGAGQGQL RGNMSGYDQF AGDPHLLGWG AAAAAAPPRP
301: AF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.