Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23160 | Canola | cytosol, nucleus, vacuole | 90.75 | 91.4 |
| CDY12779 | Canola | cytosol, nucleus, vacuole | 91.46 | 91.13 |
| GSMUA_AchrUn_... | Banana | cytosol | 40.57 | 68.26 |
| VIT_05s0049g00100.t01 | Wine grape | cytosol | 61.21 | 66.15 |
| GSMUA_Achr2P04080_001 | Banana | cytosol | 54.8 | 65.53 |
| GSMUA_Achr11P... | Banana | cytosol | 39.86 | 65.12 |
| Solyc09g089620.1.1 | Tomato | nucleus | 64.41 | 63.29 |
| TraesCS4B01G001100.1 | Wheat | cytosol, nucleus, peroxisome | 56.23 | 63.2 |
| PGSC0003DMT400044451 | Potato | nucleus | 62.99 | 62.11 |
| GSMUA_Achr5P19550_001 | Banana | cytosol | 59.07 | 61.48 |
| KRH34516 | Soybean | cytosol, nucleus, peroxisome | 63.35 | 61.38 |
| Os08t0563200-01 | Rice | cytosol | 51.25 | 61.28 |
| Zm00001d018508_P001 | Maize | cytosol | 53.38 | 61.22 |
| KRH31728 | Soybean | cytosol | 58.72 | 61.11 |
| KRG90376 | Soybean | nucleus | 57.65 | 60.45 |
| Zm00001d049906_P001 | Maize | nucleus | 56.23 | 59.62 |
| Zm00001d031887_P001 | Maize | nucleus | 56.58 | 59.11 |
| Os02t0820800-00 | Rice | cytosol, nucleus, peroxisome | 55.87 | 59.02 |
| KXG25365 | Sorghum | nucleus | 56.58 | 58.89 |
| HORVU6Hr1G010470.2 | Barley | cytosol, nucleus, peroxisome | 58.36 | 58.36 |
| TraesCS4A01G312400.1 | Wheat | nucleus | 59.07 | 58.25 |
| HORVU4Hr1G000870.2 | Barley | nucleus | 59.43 | 58.19 |
| TraesCS6A01G053800.1 | Wheat | nucleus | 58.01 | 57.8 |
| TraesCS6B01G072300.1 | Wheat | nucleus | 57.65 | 57.45 |
| TraesCS6D01G055500.1 | Wheat | cytosol | 57.65 | 57.45 |
| KRG92293 | Soybean | cytosol, mitochondrion, nucleus | 61.92 | 57.43 |
| TraesCS4D01G001800.1 | Wheat | nucleus | 58.01 | 57.19 |
| TraesCS6B01G439500.1 | Wheat | cytosol, extracellular, peroxisome | 58.72 | 56.31 |
| TraesCS6A01G399200.1 | Wheat | cytosol, extracellular, peroxisome | 58.01 | 56.21 |
| AT3G04570.1 | Thale cress | cytosol, mitochondrion, peroxisome | 62.63 | 55.87 |
| TraesCS6D01G383400.1 | Wheat | cytosol, extracellular, peroxisome | 57.65 | 55.86 |
| HORVU6Hr1G091740.1 | Barley | cytosol | 58.01 | 55.82 |
| OQU85972 | Sorghum | cytosol | 57.65 | 54.55 |
| Os07t0235200-01 | Rice | endoplasmic reticulum, extracellular | 35.59 | 52.91 |
| AT3G60870.1 | Thale cress | nucleus | 46.26 | 49.06 |
| AT3G55560.1 | Thale cress | plastid | 51.25 | 46.45 |
| AT4G22810.1 | Thale cress | nucleus | 49.47 | 42.9 |
| AT4G17800.1 | Thale cress | cytosol | 44.48 | 42.81 |
| AT2G35270.1 | Thale cress | nucleus | 42.7 | 42.11 |
| AT2G42940.1 | Thale cress | plastid | 38.43 | 42.02 |
| AT4G12050.1 | Thale cress | cytosol, nucleus, plastid | 50.53 | 41.89 |
| AT1G14490.2 | Thale cress | plastid | 33.1 | 41.33 |
| AT2G45430.1 | Thale cress | nucleus | 45.91 | 40.69 |
| HORVU0Hr1G011700.1 | Barley | cytosol | 30.61 | 39.81 |
| AT4G35390.1 | Thale cress | cytosol | 41.28 | 38.8 |
| AT1G76500.1 | Thale cress | nucleus | 41.64 | 38.74 |
| AT1G20900.1 | Thale cress | nucleus | 42.7 | 38.59 |
| AT5G49700.1 | Thale cress | nucleus | 37.72 | 38.41 |
Protein Annotations
| Gene3D:3.30.1330.80 | MapMan:35.1 | EntrezGene:827093 | UniProt:A0A178UZ13 | ProteinID:AEE83448.1 | Symbol:AHL20 |
| EMBL:AK118702 | EMBL:AK227935 | EMBL:AL161539 | InterPro:AT-hook_nuclear | ArrayExpress:AT4G14465 | EnsemblPlantsGene:AT4G14465 |
| RefSeq:AT4G14465 | TAIR:AT4G14465 | RefSeq:AT4G14465-TAIR-G | EnsemblPlants:AT4G14465.1 | TAIR:AT4G14465.1 | EMBL:AY087587 |
| EMBL:BR000356 | EMBL:BT006423 | GO:GO:0002376 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003680 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0006952 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009987 |
| GO:GO:0042742 | GO:GO:0045087 | GO:GO:0045824 | GO:GO:1900425 | InterPro:IPR005175 | RefSeq:NP_567432.1 |
| ProteinID:OAO98690.1 | PFAM:PF03479 | PIRSF:PIRSF016021 | PO:PO:0000037 | PO:PO:0001185 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009031 |
| PO:PO:0009046 | PO:PO:0020100 | PO:PO:0025022 | InterPro:PPC_dom | PFscan:PS51742 | PANTHER:PTHR31100 |
| PANTHER:PTHR31100:SF3 | UniProt:Q8GWQ2 | SUPFAM:SSF117856 | TMHMM:TMhelix | UniParc:UPI00000ADF7B | EMBL:Z97336 |
| SEG:seg | : | : | : | : | : |
Description
AHL20AT-hook motif nuclear-localized protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWQ2]
Coordinates
chr4:+:8320538..8322352
Molecular Weight (calculated)
29541.7 Da
IEP (calculated)
6.651
GRAVY (calculated)
-0.414
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MANPWWTNQS GLAGMVDHSV SSGHHQNHHH QSLLTKGDLG IAMNQSQDND QDEEDDPREG AVEVVNRRPR GRPPGSKNKP KAPIFVTRDS PNALRSHVLE
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.