Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os08t0428400-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14465.1 | Os08t0428400-01 | AT3G17860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d018508_P001 | Maize | cytosol | 81.95 | 88.98 |
| OQU85972 | Sorghum | cytosol | 90.98 | 81.48 |
| TraesCS6A01G399200.1 | Wheat | cytosol, extracellular, peroxisome | 85.71 | 78.62 |
| TraesCS6D01G383400.1 | Wheat | cytosol, extracellular, peroxisome | 85.71 | 78.62 |
| HORVU6Hr1G091740.1 | Barley | cytosol | 85.34 | 77.74 |
| TraesCS6B01G439500.1 | Wheat | cytosol, extracellular, peroxisome | 84.96 | 77.13 |
| GSMUA_AchrUn_... | Banana | cytosol | 46.62 | 74.25 |
| GSMUA_Achr2P04080_001 | Banana | cytosol | 64.29 | 72.77 |
| GSMUA_Achr11P... | Banana | cytosol | 45.49 | 70.35 |
| Os08t0563200-01 | Rice | cytosol | 60.9 | 68.94 |
| VIT_05s0049g00100.t01 | Wine grape | cytosol | 65.04 | 66.54 |
| KRH31728 | Soybean | cytosol | 66.92 | 65.93 |
| KRG90376 | Soybean | nucleus | 66.17 | 65.67 |
| GSMUA_Achr5P19550_001 | Banana | cytosol | 62.78 | 61.85 |
| KRH34516 | Soybean | cytosol, nucleus, peroxisome | 66.92 | 61.38 |
| Solyc09g089620.1.1 | Tomato | nucleus | 64.66 | 60.14 |
| PGSC0003DMT400044451 | Potato | nucleus | 63.16 | 58.95 |
| KRG92293 | Soybean | cytosol, mitochondrion, nucleus | 65.41 | 57.43 |
| Os07t0235200-01 | Rice | endoplasmic reticulum, extracellular | 39.85 | 56.08 |
| CDY23160 | Canola | cytosol, nucleus, vacuole | 58.65 | 55.91 |
| AT4G14465.1 | Thale cress | cytosol, nucleus, plastid | 59.02 | 55.87 |
| CDY12779 | Canola | cytosol, nucleus, vacuole | 58.27 | 54.96 |
| Os03t0270000-01 | Rice | nucleus | 49.25 | 50.78 |
| Os08t0159700-01 | Rice | cytosol | 48.12 | 44.29 |
| Os04t0590200-01 | Rice | cytosol | 49.25 | 42.95 |
| Os02t0448000-00 | Rice | nucleus | 49.62 | 41.77 |
| Os02t0713700-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 50.0 | 39.58 |
| Os06t0326900-01 | Rice | nucleus | 45.86 | 37.89 |
| Os06t0136900-01 | Rice | nucleus | 45.49 | 36.89 |
| Os01t0246601-00 | Rice | plastid | 30.08 | 35.09 |
| Os01t0953801-00 | Rice | nucleus | 34.21 | 34.34 |
| Os08t0478466-01 | Rice | nucleus | 36.47 | 29.94 |
| Os09t0464300-00 | Rice | nucleus | 36.84 | 29.34 |
Protein Annotations
| Gene3D:3.30.1330.80 | MapMan:35.1 | EntrezGene:4331173 | ProteinID:BAD22878.1 | ProteinID:BAD23110.1 | ProteinID:BAF10460.1 |
| ProteinID:BAS81625.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003680 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005175 |
| EnsemblPlantsGene:Os02g0820800 | EnsemblPlants:Os02t0820800-00 | PFAM:PF03479 | InterPro:PPC_dom | PFscan:PS51742 | PANTHER:PTHR31100 |
| PANTHER:PTHR31100:SF3 | UniProt:Q6K709 | SUPFAM:SSF117856 | UniParc:UPI00003B0484 | RefSeq:XP_015626575.1 | SEG:seg |
Description
Predicted AT-hook DNA-binding domain containing protein. (Os02t0820800-00)
Coordinates
chr2:+:35242169..35243851
Molecular Weight (calculated)
26627.5 Da
IEP (calculated)
6.023
GRAVY (calculated)
-0.236
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLPEQPSGS SGPKAELPVA KEPEASPTGG AAADHADENN ESGGGEPREG AVVAAPNRRP RGRPPGSKNK PKPPIFVTRD SPNALRSHVM EVAGGADVAD
101: AIAQFSRRRQ RGVCVLSGAG TVANVALRQP SAPGAVVALH GRFEILSLTG TFLPGPAPPG STGLTVYLAG GQGQVVGGSV VGSLIAAGPV MVIASTFANA
201: TYERLPLEEE EEGSGPPMPG GAEPLMAGGH GIADPSALPM FNLPPSNGLG GGGDGFPWAA HPRPPY
101: AIAQFSRRRQ RGVCVLSGAG TVANVALRQP SAPGAVVALH GRFEILSLTG TFLPGPAPPG STGLTVYLAG GQGQVVGGSV VGSLIAAGPV MVIASTFANA
201: TYERLPLEEE EEGSGPPMPG GAEPLMAGGH GIADPSALPM FNLPPSNGLG GGGDGFPWAA HPRPPY
001: MANPWWTNQS GLAGMVDHSV SSGHHQNHHH QSLLTKGDLG IAMNQSQDND QDEEDDPREG AVEVVNRRPR GRPPGSKNKP KAPIFVTRDS PNALRSHVLE
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y
Arabidopsis Description
AHL20AT-hook motif nuclear-localized protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWQ2]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.