Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| KRH39044 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14465.1 | KRH39044 | AT3G17860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH34516 | Soybean | cytosol, nucleus, peroxisome | 87.79 | 91.72 |
| KRG90376 | Soybean | nucleus | 68.32 | 77.24 |
| KRH31728 | Soybean | cytosol | 68.65 | 77.04 |
| VIT_05s0049g00100.t01 | Wine grape | cytosol | 63.7 | 74.23 |
| GSMUA_Achr2P04080_001 | Banana | cytosol | 57.43 | 74.04 |
| GSMUA_AchrUn_... | Banana | cytosol | 40.59 | 73.65 |
| GSMUA_Achr11P... | Banana | cytosol | 38.61 | 68.02 |
| Os08t0563200-01 | Rice | cytosol | 52.48 | 67.66 |
| Solyc09g089620.1.1 | Tomato | nucleus | 62.71 | 66.43 |
| TraesCS4B01G001100.1 | Wheat | cytosol, nucleus, peroxisome | 54.79 | 66.4 |
| Zm00001d018508_P001 | Maize | cytosol | 53.47 | 66.12 |
| Os02t0820800-00 | Rice | cytosol, nucleus, peroxisome | 57.43 | 65.41 |
| PGSC0003DMT400044451 | Potato | nucleus | 61.39 | 65.26 |
| GSMUA_Achr5P19550_001 | Banana | cytosol | 58.09 | 65.19 |
| TraesCS6D01G383400.1 | Wheat | cytosol, extracellular, peroxisome | 60.73 | 63.45 |
| TraesCS6A01G399200.1 | Wheat | cytosol, extracellular, peroxisome | 60.73 | 63.45 |
| TraesCS6B01G439500.1 | Wheat | cytosol, extracellular, peroxisome | 61.06 | 63.14 |
| HORVU6Hr1G091740.1 | Barley | cytosol | 60.73 | 63.01 |
| Zm00001d049906_P001 | Maize | nucleus | 54.79 | 62.64 |
| Zm00001d031887_P001 | Maize | nucleus | 55.45 | 62.45 |
| CDY23160 | Canola | cytosol, nucleus, vacuole | 57.43 | 62.37 |
| KXG25365 | Sorghum | nucleus | 55.45 | 62.22 |
| CDY12779 | Canola | cytosol, nucleus, vacuole | 57.76 | 62.06 |
| AT4G14465.1 | Thale cress | cytosol, nucleus, plastid | 57.43 | 61.92 |
| TraesCS4D01G001800.1 | Wheat | nucleus | 57.1 | 60.7 |
| TraesCS4A01G312400.1 | Wheat | nucleus | 56.77 | 60.35 |
| KRG92616 | Soybean | nucleus | 55.12 | 60.29 |
| KRH34163 | Soybean | nucleus | 55.45 | 60.0 |
| TraesCS6B01G072300.1 | Wheat | nucleus | 55.45 | 59.57 |
| OQU85972 | Sorghum | cytosol | 58.09 | 59.26 |
| HORVU4Hr1G000870.2 | Barley | nucleus | 56.11 | 59.23 |
| HORVU6Hr1G010470.2 | Barley | cytosol, nucleus, peroxisome | 54.79 | 59.07 |
| TraesCS6D01G055500.1 | Wheat | cytosol | 54.46 | 58.51 |
| TraesCS6A01G053800.1 | Wheat | nucleus | 54.46 | 58.51 |
| Os07t0235200-01 | Rice | endoplasmic reticulum, extracellular | 34.98 | 56.08 |
| KRH73062 | Soybean | cytosol | 40.59 | 53.71 |
| KRH28289 | Soybean | cytosol | 43.56 | 52.8 |
| KRH00993 | Soybean | nucleus | 46.53 | 52.61 |
| KRH51551 | Soybean | plastid | 35.31 | 52.45 |
| KRH15076 | Soybean | nucleus | 30.03 | 52.3 |
| KRH31005 | Soybean | nucleus | 49.84 | 52.25 |
| KRH40225 | Soybean | nucleus | 46.53 | 52.22 |
| KRH77205 | Soybean | nucleus | 42.9 | 52.0 |
| KRH57320 | Soybean | nucleus | 45.87 | 49.12 |
| KRG97871 | Soybean | nucleus | 48.51 | 48.68 |
| KRH76289 | Soybean | nucleus | 46.2 | 48.61 |
| KRH04051 | Soybean | nucleus | 45.54 | 48.08 |
| KRH58197 | Soybean | cytosol | 43.56 | 47.83 |
| KRH14482 | Soybean | cytosol, mitochondrion, peroxisome | 38.94 | 47.39 |
| KRH04340 | Soybean | cytosol | 38.61 | 46.61 |
| KRH73632 | Soybean | cytosol, endoplasmic reticulum, peroxisome | 37.62 | 45.97 |
| KRH65251 | Soybean | nucleus | 46.86 | 45.81 |
| KRH28008 | Soybean | nucleus | 44.55 | 45.3 |
| KRH77431 | Soybean | nucleus | 44.55 | 45.0 |
| HORVU0Hr1G011700.1 | Barley | cytosol | 27.06 | 37.96 |
| KRH62181 | Soybean | nucleus | 34.98 | 37.86 |
| KRH52892 | Soybean | nucleus | 34.98 | 37.32 |
| KRH16838 | Soybean | nucleus | 31.35 | 37.11 |
| KRH72453 | Soybean | nucleus | 33.0 | 36.9 |
Protein Annotations
| Gene3D:3.30.1330.80 | MapMan:35.1 | UniProt:A0A0R0EF19 | EMBL:ACUP02012737 | EnsemblPlantsGene:GLYMA_20G202300 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003680 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005175 | EnsemblPlants:KRG92293 | ProteinID:KRG92293 |
| ProteinID:KRG92293.1 | PFAM:PF03479 | InterPro:PPC_dom | PFscan:PS51742 | PANTHER:PTHR31100 | PANTHER:PTHR31100:SF42 |
| SUPFAM:SSF117856 | TMHMM:TMhelix | UniParc:UPI0006EDA9A2 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr20:-:43938113..43940679
Molecular Weight (calculated)
30928.3 Da
IEP (calculated)
9.091
GRAVY (calculated)
-0.462
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVAKKNNQT NLKEGKRTTV ANPWWTGQGG LSGVDHPGTH SPGLGKRPSD LGISENSGGH NREEDEDNRD EPKEGAVEVG TRRPRGRPPG SKNKPKPPIF
101: VTRDSPNTLR SHVMEVTGGA DVAESVAQFA RRRQRGVCVL SGSGSVANVT LRQPSAPGAV VALHGRFEIL SLTGTFLPGP APPGSTGLTV YLTGGQGQIV
201: GGSVVGSLVA AGPVMVIAAT FANATYERLP LDEDDEGPSS AAGAQGGGSS PPPPLGIGSS GGGQLQGGMP DPSSMPLYNL PPNGGVGQVG HEALAWAHGR
301: APF
101: VTRDSPNTLR SHVMEVTGGA DVAESVAQFA RRRQRGVCVL SGSGSVANVT LRQPSAPGAV VALHGRFEIL SLTGTFLPGP APPGSTGLTV YLTGGQGQIV
201: GGSVVGSLVA AGPVMVIAAT FANATYERLP LDEDDEGPSS AAGAQGGGSS PPPPLGIGSS GGGQLQGGMP DPSSMPLYNL PPNGGVGQVG HEALAWAHGR
301: APF
001: MANPWWTNQS GLAGMVDHSV SSGHHQNHHH QSLLTKGDLG IAMNQSQDND QDEEDDPREG AVEVVNRRPR GRPPGSKNKP KAPIFVTRDS PNALRSHVLE
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y
Arabidopsis Description
AHL20AT-hook motif nuclear-localized protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWQ2]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.