CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04051	Soybean	nucleus	98.59	97.21
KRH28008	Soybean	nucleus	84.1	79.87
KRH77431	Soybean	nucleus	83.39	78.67
Solyc06g060500.1.1	Tomato	nucleus	58.66	75.45
VIT_02s0025g05100.t01	Wine grape	nucleus	80.21	75.17
PGSC0003DMT400045315	Potato	nucleus	58.3	74.66
Solyc08g079720.2.1	Tomato	nucleus	69.61	67.47
PGSC0003DMT400010004	Potato	nucleus	69.26	66.89
PGSC0003DMT400032509	Potato	nucleus	71.38	64.95
Solyc08g007560.1.1	Tomato	nucleus	72.79	64.58
KRH65251	Soybean	nucleus	68.55	62.58
KRH76289	Soybean	nucleus	63.6	62.5
KRH77205	Soybean	nucleus	51.59	58.4
KRH28289	Soybean	cytosol	51.59	58.4
Zm00001d016132_P001	Maize	nucleus	60.42	55.34
Os02t0448000-00	Rice	nucleus	61.48	55.06
HORVU6Hr1G037630.1	Barley	nucleus	59.72	54.69
TraesCS6B01G209300.1	Wheat	nucleus	59.72	54.69
HORVU6Hr1G037640.1	Barley	nucleus	59.72	54.69
KRH31728	Soybean	cytosol	51.94	54.44
TraesCS6A01G176200.1	Wheat	nucleus	59.36	54.37
TraesCS6D01G167600.1	Wheat	nucleus	59.36	54.37
KRH14482	Soybean	cytosol, mitochondrion, peroxisome	47.35	53.82
KRH00993	Soybean	nucleus	50.88	53.73
KRH73632	Soybean	cytosol, endoplasmic reticulum, peroxisome	47.0	53.63
Zm00001d053429_P001	Maize	nucleus	60.42	53.44
KRG90376	Soybean	nucleus	50.53	53.36
KRH40225	Soybean	nucleus	50.53	52.96
EES04848	Sorghum	nucleus	60.78	52.6
KRH04340	Soybean	cytosol	45.23	51.0
KRH51551	Soybean	plastid	36.75	50.98
KRH58197	Soybean	cytosol	49.12	50.36
KRG92616	Soybean	nucleus	48.76	49.82
KRH34163	Soybean	nucleus	48.41	48.93
KRH34516	Soybean	cytosol, nucleus, peroxisome	49.47	48.28
KRH15076	Soybean	nucleus	28.27	45.98
KRG92293	Soybean	cytosol, mitochondrion, nucleus	49.12	45.87
KRH73062	Soybean	cytosol	36.75	45.41
KRH31005	Soybean	nucleus	45.58	44.64
KRG97871	Soybean	nucleus	46.29	43.38
KRH62181	Soybean	nucleus	37.1	37.5
KRH52892	Soybean	nucleus	37.1	36.97
KRH16838	Soybean	nucleus	32.86	36.33
KRH72453	Soybean	nucleus	33.57	35.06

Protein Annotations

EntrezGene:100807581	Gene3D:3.30.1330.80	MapMan:35.1	EMBL:ACUP02002825	InterPro:AT-hook_nuclear	EnsemblPlantsGene:GLYMA_05G054200
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:I1K0J3
InterPro:IPR005175	EnsemblPlants:KRH57320	ProteinID:KRH57320	ProteinID:KRH57320.1	PFAM:PF03479	PIRSF:PIRSF016021
InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100	PANTHER:PTHR31100:SF15	SUPFAM:SSF117856	UniParc:UPI0002339705
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:4921245..4923175

Molecular Weight (calculated)

29748.0 Da

IEP (calculated)

6.679

GRAVY (calculated)

-0.402

Length

283 amino acids

Sequence
(BLAST)

001: MDPISAHGHS LPPPFHTRDL HLHHQQQQHQ FQSLNQATED ENSGSSGAQK REREENSNNN EGAGEAEITR RPRGRPAGSK NKPKPPIIIT RDSANAMRTH
101: MMEVADGCDI VESVSEFARK RQRGVCIMSG TGTVNNVTLR QPASSGSVVT LHGRFEILSL SGSFLPPPAP PAASGLTIYL AGGQGQVVGG SVVGTLVASG
201: PVVIMAASFS NAAYERLPLE DEDPSLQMQG GSIGSPGASG VGQSQLLGGD ATAPLFHGLP PNLLNSVQMP SEPFWAASAR PPF

Best Arabidopsis Sequence Match ( AT4G22810.1 )
(BLAST)

001: MDPVQSHGSQ SSLPPPFHAR DFQLHLQQQQ QEFFLHHHQQ QRNQTDGDQQ GGSGGNRQIK MDREETSDNI DNIANNSGSE GKDIDIHGGS GEGGGGSGGD
101: HQMTRRPRGR PAGSKNKPKP PIIITRDSAN ALRTHVMEIG DGCDLVESVA TFARRRQRGV CVMSGTGNVT NVTIRQPGSH PSPGSVVSLH GRFEILSLSG
201: SFLPPPAPPT ATGLSVYLAG GQGQVVGGSV VGPLLCAGPV VVMAASFSNA AYERLPLEED EMQTPVHGGG GGGSLESPPM MGQQLQHQQQ AMSGHQGLPP
301: NLLGSVQLQQ QHDQSYWSTG RPPY

Arabidopsis Description

AHL24AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178V625]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.