Factsheet for Solyc08g007560.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032509	Potato	nucleus	95.3	97.75
Solyc06g060500.1.1	Tomato	nucleus	58.31	84.55
Solyc08g079720.2.1	Tomato	nucleus	76.49	83.56
VIT_02s0025g05100.t01	Wine grape	nucleus	70.53	74.5
KRH57320	Soybean	nucleus	64.58	72.79
KRH04051	Soybean	nucleus	65.2	72.47
KRH77431	Soybean	nucleus	65.83	70.0
KRH28008	Soybean	nucleus	65.2	69.8
Solyc01g091470.2.1	Tomato	nucleus	58.31	61.59
HORVU6Hr1G037630.1	Barley	nucleus	53.92	55.66
HORVU6Hr1G037640.1	Barley	nucleus	53.92	55.66
Zm00001d016132_P001	Maize	nucleus	53.6	55.34
TraesCS6D01G167600.1	Wheat	nucleus	53.6	55.34
TraesCS6B01G209300.1	Wheat	nucleus	53.6	55.34
TraesCS6A01G176200.1	Wheat	nucleus	53.6	55.34
Os02t0448000-00	Rice	nucleus	53.6	54.11
EES04848	Sorghum	nucleus	54.23	52.91
Zm00001d053429_P001	Maize	nucleus	52.66	52.5
Solyc04g082810.2.1	Tomato	cytosol, nucleus, peroxisome	40.13	52.24
Solyc07g056300.1.1	Tomato	cytosol, nucleus, peroxisome	40.75	51.79
Solyc01g080960.2.1	Tomato	nucleus	41.69	50.19
Solyc11g006090.1.1	Tomato	nucleus	39.19	49.02
Solyc09g089620.1.1	Tomato	nucleus	42.63	47.55
Solyc08g077010.1.1	Tomato	cytosol	42.01	46.53
Solyc05g053000.1.1	Tomato	nucleus	36.99	37.7
Solyc12g087950.1.1	Tomato	nucleus	25.39	30.45
Solyc04g076220.2.1	Tomato	nucleus	31.35	29.76

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175	UniProt:K4CIP3	PFAM:PF03479	PIRSF:PIRSF016021
InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100	PANTHER:PTHR31100:SF15	SUPFAM:SSF117856	EnsemblPlantsGene:Solyc08g007560.1
EnsemblPlants:Solyc08g007560.1.1	UniParc:UPI000276C641	SEG:seg	:	:	:

Description

AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:K4CIP3]

Coordinates

chr8:+:2106197..2107409

Molecular Weight (calculated)

34338.7 Da

IEP (calculated)

6.571

GRAVY (calculated)

-0.759

Length

319 amino acids

Sequence
(BLAST)

001: MDPSNNSLPP PFHTRNFNLQ HHNNNHQHHH QQQQQQLQFQ HSSEDEQSGT SGLNMSGQKR DREDNNNNNN NNNDNNNNNY NDSNVDESTD ELGVNGSHRE
101: GEFNRRPRGR PAGSKNKPKA PIIITRDSAN ALRTHVMEIA DGCDIMESVS NFSRRRQRGV CIMSGTGNVT NVNLRQPASP GAIATLHGRF EILSLAGSFL
201: PPPAPPAASG LTIYLAGGQG QVVGGCVVGS LMASGPVVIM AASFSNAAYE RLPLEEDDSN QLPVQGGSLG SPGATVAPGG PQHQQLLGDP SLFHGMPPNL
301: LNNVQLPSEA YWATGRPPF

Best Arabidopsis Sequence Match ( AT4G22810.1 )
(BLAST)

001: MDPVQSHGSQ SSLPPPFHAR DFQLHLQQQQ QEFFLHHHQQ QRNQTDGDQQ GGSGGNRQIK MDREETSDNI DNIANNSGSE GKDIDIHGGS GEGGGGSGGD
101: HQMTRRPRGR PAGSKNKPKP PIIITRDSAN ALRTHVMEIG DGCDLVESVA TFARRRQRGV CVMSGTGNVT NVTIRQPGSH PSPGSVVSLH GRFEILSLSG
201: SFLPPPAPPT ATGLSVYLAG GQGQVVGGSV VGPLLCAGPV VVMAASFSNA AYERLPLEED EMQTPVHGGG GGGSLESPPM MGQQLQHQQQ AMSGHQGLPP
301: NLLGSVQLQQ QHDQSYWSTG RPPY

Arabidopsis Description

AHL24AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178V625]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.