Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g111060.2.1 | |
| Solyc03g116320.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G42940.1 | Solyc03g116320.2.1 | AT3G47620.1 | 21798944 |
| AT2G42940.1 | Solyc01g111060.2.1 | AT4G38800.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400044573 | Potato | cytosol | 94.02 | 94.02 |
| KRH14482 | Soybean | cytosol, mitochondrion, peroxisome | 66.14 | 66.67 |
| KRH73632 | Soybean | cytosol, endoplasmic reticulum, peroxisome | 65.74 | 66.53 |
| VIT_12s0028g00070.t01 | Wine grape | cytoskeleton, cytosol, plastid | 70.92 | 66.42 |
| Bra000281.1-P | Field mustard | plastid | 61.35 | 59.0 |
| AT2G42940.1 | Thale cress | plastid | 60.16 | 58.75 |
| Solyc06g060500.1.1 | Tomato | nucleus | 51.0 | 58.18 |
| CDY53650 | Canola | plastid | 59.76 | 57.69 |
| CDX79838 | Canola | plastid | 59.76 | 57.69 |
| Bra004732.1-P | Field mustard | plastid | 59.76 | 57.47 |
| Bra016853.1-P | Field mustard | plastid | 58.57 | 56.32 |
| CDY70947 | Canola | plastid | 58.57 | 56.32 |
| CDY14862 | Canola | plastid | 58.57 | 56.32 |
| Solyc01g080960.2.1 | Tomato | nucleus | 49.8 | 47.17 |
| Solyc08g079720.2.1 | Tomato | nucleus | 52.59 | 45.21 |
| Solyc04g082810.2.1 | Tomato | cytosol, nucleus, peroxisome | 43.82 | 44.9 |
| Solyc11g006090.1.1 | Tomato | nucleus | 45.02 | 44.31 |
| Solyc01g091470.2.1 | Tomato | nucleus | 51.39 | 42.72 |
| Solyc09g089620.1.1 | Tomato | nucleus | 47.81 | 41.96 |
| Solyc08g007560.1.1 | Tomato | nucleus | 51.79 | 40.75 |
| Solyc08g077010.1.1 | Tomato | cytosol | 46.22 | 40.28 |
| Solyc05g053000.1.1 | Tomato | nucleus | 43.43 | 34.82 |
| Solyc12g087950.1.1 | Tomato | nucleus | 31.47 | 29.7 |
| Solyc04g076220.2.1 | Tomato | nucleus | 37.05 | 27.68 |
Protein Annotations
| Gene3D:3.30.1330.80 | MapMan:35.1 | InterPro:AT-hook_nuclear | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003680 | GO:GO:0003682 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006464 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 |
| GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010208 | GO:GO:0010228 | GO:GO:0010529 | GO:GO:0016043 |
| GO:GO:0019538 | GO:GO:0031490 | GO:GO:0035067 | GO:GO:1900111 | InterPro:IPR005175 | UniProt:K4CGG3 |
| PFAM:PF03479 | PIRSF:PIRSF016021 | InterPro:PPC_dom | PFscan:PS51742 | PANTHER:PTHR31100 | PANTHER:PTHR31100:SF17 |
| SUPFAM:SSF117856 | EnsemblPlantsGene:Solyc07g056300.1 | EnsemblPlants:Solyc07g056300.1.1 | TMHMM:TMhelix | UniParc:UPI000276B067 | SEG:seg |
Description
AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:K4CGG3]
Coordinates
chr7:-:64150840..64151595
Molecular Weight (calculated)
26579.0 Da
IEP (calculated)
9.265
GRAVY (calculated)
-0.123
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MACITKETIN QNQEIDNNNL GVDTSGLMLA AKLPKVRDGD SVRRPRGRPA GSKNKPKPPI IITRDSANAL RAHAMEVNSG CDVNESLVNF ARRKQRGICV
101: LSATGCVTNV TLRQPATSGS IVTLHGRFEI LSILGSVLPP PAPPGVTGLT IYLAGAQGQV IGGGVVGALI ASGPVIIMAA TFMNATFDRL PLDDDDLVAS
201: TAAQNQHYQK TQQRHQVDVP DIYGLPQSVI TNGALHPEVY SWAPGRTLSK S
101: LSATGCVTNV TLRQPATSGS IVTLHGRFEI LSILGSVLPP PAPPGVTGLT IYLAGAQGQV IGGGVVGALI ASGPVIIMAA TFMNATFDRL PLDDDDLVAS
201: TAAQNQHYQK TQQRHQVDVP DIYGLPQSVI TNGALHPEVY SWAPGRTLSK S
001: MAGGTALTPT SVGSKSVPMR NHEATERGNT NNNLRALPKA VQPVSSIEGE MAKRPRGRPA GSKNKPKPPI IVTHDSPNSL RANAVEISSG CDICETLSDF
101: ARRKQRGLCI LSANGCVTNV TLRQPASSGA IVTLHGRYEI LSLLGSILPP PAPLGITGLT IYLAGPQGQV VGGGVVGGLI ASGPVVLMAA SFMNAVFDRL
201: PMDDDEAASM QNQQYYQNGR SRPLDDIHGL PQNLLTNGNS ASDIYSWGPA QRVMSKP
101: ARRKQRGLCI LSANGCVTNV TLRQPASSGA IVTLHGRYEI LSLLGSILPP PAPLGITGLT IYLAGPQGQV VGGGVVGGLI ASGPVVLMAA SFMNAVFDRL
201: PMDDDEAASM QNQQYYQNGR SRPLDDIHGL PQNLLTNGNS ASDIYSWGPA QRVMSKP
Arabidopsis Description
AHL16AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VQG3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.