Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53650 | Canola | plastid | 99.23 | 99.23 |
| AT2G42940.1 | Thale cress | plastid | 91.92 | 93.0 |
| Bra000281.1-P | Field mustard | plastid | 91.54 | 91.19 |
| CDY14862 | Canola | plastid | 86.54 | 86.21 |
| CDY70947 | Canola | plastid | 86.15 | 85.82 |
| KRH73632 | Soybean | cytosol, endoplasmic reticulum, peroxisome | 63.08 | 66.13 |
| KRH14482 | Soybean | cytosol, mitochondrion, peroxisome | 62.69 | 65.46 |
| VIT_12s0028g00070.t01 | Wine grape | cytoskeleton, cytosol, plastid | 65.77 | 63.81 |
| PGSC0003DMT400044573 | Potato | cytosol | 58.08 | 60.16 |
| Solyc07g056300.1.1 | Tomato | cytosol, nucleus, peroxisome | 57.69 | 59.76 |
| CDX79599 | Canola | cytosol, peroxisome, plastid | 45.77 | 43.59 |
| CDY72485 | Canola | nucleus | 45.38 | 43.22 |
| CDY59041 | Canola | cytosol, nucleus, peroxisome | 46.15 | 41.96 |
| CDX87591 | Canola | nucleus | 43.85 | 40.71 |
| CDY20404 | Canola | nucleus | 41.92 | 40.22 |
| CDX84222 | Canola | cytosol | 29.62 | 40.1 |
| CDY31677 | Canola | cytosol | 30.38 | 40.1 |
| CDX75499 | Canola | cytosol, nucleus, peroxisome | 45.77 | 39.4 |
| CDY45983 | Canola | nucleus | 43.46 | 39.24 |
| CDX69136 | Canola | cytosol, nucleus, peroxisome | 45.38 | 39.07 |
| CDY21124 | Canola | cytosol, endoplasmic reticulum, peroxisome | 43.08 | 38.89 |
| CDY18931 | Canola | nucleus | 46.15 | 38.84 |
| CDY30003 | Canola | cytosol, nucleus, peroxisome, plastid | 43.08 | 38.75 |
| CDX90445 | Canola | plastid | 40.77 | 38.69 |
| CDY37040 | Canola | nucleus | 45.77 | 38.64 |
| CDX88286 | Canola | cytosol, endoplasmic reticulum, nucleus | 40.77 | 38.41 |
| CDX74739 | Canola | nucleus | 45.77 | 38.39 |
| CDY23160 | Canola | cytosol, nucleus, vacuole | 41.15 | 38.35 |
| CDY12779 | Canola | cytosol, nucleus, vacuole | 41.54 | 38.3 |
| CDY64701 | Canola | nucleus | 45.77 | 38.26 |
| CDX68095 | Canola | cytosol | 39.62 | 38.15 |
| CDY27387 | Canola | nucleus | 45.77 | 38.14 |
| CDX85952 | Canola | cytosol | 39.62 | 37.87 |
| CDY49327 | Canola | cytosol, endoplasmic reticulum, nucleus | 45.38 | 37.58 |
| CDY41289 | Canola | nucleus | 45.38 | 37.46 |
| CDX82978 | Canola | cytosol, nucleus, plastid | 45.38 | 37.46 |
| CDX78802 | Canola | cytosol | 41.92 | 37.46 |
| CDX98771 | Canola | nucleus | 45.38 | 37.22 |
| CDX96613 | Canola | nucleus | 43.08 | 37.21 |
| CDY54780 | Canola | cytosol | 41.54 | 36.99 |
| CDY41211 | Canola | plastid | 41.92 | 36.95 |
| CDY60321 | Canola | plastid | 41.92 | 36.82 |
| CDY68242 | Canola | plastid | 41.92 | 36.7 |
| CDY53687 | Canola | nucleus | 41.92 | 36.58 |
| CDX94128 | Canola | nucleus | 45.38 | 36.09 |
| CDY31511 | Canola | nucleus | 37.31 | 36.06 |
| CDY33658 | Canola | nucleus | 40.38 | 35.96 |
| CDY45266 | Canola | plastid | 28.08 | 35.61 |
| CDY04391 | Canola | nucleus | 44.62 | 35.47 |
| CDY02949 | Canola | plastid | 41.15 | 34.85 |
| CDY29494 | Canola | nucleus | 36.54 | 34.67 |
| CDX76085 | Canola | plastid | 40.77 | 34.53 |
| CDY31858 | Canola | nucleus | 36.15 | 34.43 |
| CDY01347 | Canola | nucleus | 35.77 | 34.19 |
| CDY21451 | Canola | cytosol | 30.77 | 32.65 |
| CDX83182 | Canola | cytosol | 30.38 | 32.24 |
| CDY65376 | Canola | nucleus | 28.08 | 26.55 |
Protein Annotations
| EnsemblPlants:CDX79838 | EnsemblPlantsGene:GSBRNA2T00132681001 | Gene3D:3.30.1330.80 | InterPro:AT-hook_nuclear | InterPro:IPR005175 | InterPro:PPC_dom |
| PANTHER:PTHR31100 | PANTHER:PTHR31100:SF17 | PFAM:PF03479 | PFscan:PS51742 | PIRSF:PIRSF016021 | ProteinID:CDX79838 |
| ProteinID:CDX79838.1 | SEG:seg | SUPFAM:SSF117856 | TMHMM:TMhelix | UniParc:UPI0004EDB24D | MapMan:35.1 |
Description
BnaA05g03180D
Coordinates
chrLK031819:+:431422..432204
Molecular Weight (calculated)
27209.6 Da
IEP (calculated)
9.733
GRAVY (calculated)
-0.228
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGAALTPT SVGSKSLLPL RNHEAVAERG PNNNNNMKAL PKAVQPVSSI EGEMAKRPRG RPAGSKNKPK PPIIVTHDSP NSLRAHAVEI SSGNDICETL
101: SDYARRKQRG LCILSANGCV NNVTLRQPAS SGGIVTLHGR FEILSLLGSI LPPPAPLGIT GLTIYLAGPQ GQVVGGGVVG GLIASGPVVL MAASFMNAVF
201: DRLPLDDDEA ASMHNQQYYQ NGRSRPLDDI HGLPQNLLTN GNSGSDIYSW GAAQRAMSKP
101: SDYARRKQRG LCILSANGCV NNVTLRQPAS SGGIVTLHGR FEILSLLGSI LPPPAPLGIT GLTIYLAGPQ GQVVGGGVVG GLIASGPVVL MAASFMNAVF
201: DRLPLDDDEA ASMHNQQYYQ NGRSRPLDDI HGLPQNLLTN GNSGSDIYSW GAAQRAMSKP
001: MAGGTALTPT SVGSKSVPMR NHEATERGNT NNNLRALPKA VQPVSSIEGE MAKRPRGRPA GSKNKPKPPI IVTHDSPNSL RANAVEISSG CDICETLSDF
101: ARRKQRGLCI LSANGCVTNV TLRQPASSGA IVTLHGRYEI LSLLGSILPP PAPLGITGLT IYLAGPQGQV VGGGVVGGLI ASGPVVLMAA SFMNAVFDRL
201: PMDDDEAASM QNQQYYQNGR SRPLDDIHGL PQNLLTNGNS ASDIYSWGPA QRVMSKP
101: ARRKQRGLCI LSANGCVTNV TLRQPASSGA IVTLHGRYEI LSLLGSILPP PAPLGITGLT IYLAGPQGQV VGGGVVGGLI ASGPVVLMAA SFMNAVFDRL
201: PMDDDEAASM QNQQYYQNGR SRPLDDIHGL PQNLLTNGNS ASDIYSWGPA QRVMSKP
Arabidopsis Description
AHL16AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VQG3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.