Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G12050.1 | CDX89318 | AT4G26630.1 | 25387881 |
| AT4G12050.1 | CDX94304 | AT4G26630.1 | 25387881 |
| AT4G12050.1 | CDX97358 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G12050.1 | Thale cress | cytosol, nucleus, plastid | 91.44 | 88.2 |
| CDY41289 | Canola | nucleus | 74.92 | 77.78 |
| CDX82978 | Canola | cytosol, nucleus, plastid | 74.92 | 77.78 |
| CDX94128 | Canola | nucleus | 77.68 | 77.68 |
| CDX98771 | Canola | nucleus | 75.23 | 77.6 |
| CDY18931 | Canola | nucleus | 54.43 | 57.61 |
| CDY37040 | Canola | nucleus | 54.13 | 57.47 |
| CDX74739 | Canola | nucleus | 54.13 | 57.1 |
| CDY27387 | Canola | nucleus | 54.43 | 57.05 |
| CDX90445 | Canola | plastid | 42.2 | 50.37 |
| CDX78802 | Canola | cytosol | 43.12 | 48.45 |
| CDY23160 | Canola | cytosol, nucleus, vacuole | 40.98 | 48.03 |
| CDY54780 | Canola | cytosol | 42.81 | 47.95 |
| CDY12779 | Canola | cytosol, nucleus, vacuole | 41.28 | 47.87 |
| Os06t0136900-01 | Rice | nucleus | 47.09 | 46.95 |
| CDX79599 | Canola | cytosol, peroxisome, plastid | 39.14 | 46.89 |
| CDY72485 | Canola | nucleus | 38.84 | 46.52 |
| CDX79838 | Canola | plastid | 35.47 | 44.62 |
| CDY53650 | Canola | plastid | 35.47 | 44.62 |
| HORVU7Hr1G017700.2 | Barley | nucleus | 47.4 | 44.41 |
| Zm00001d036088_P001 | Maize | extracellular | 37.92 | 44.29 |
| CDY59041 | Canola | cytosol, nucleus, peroxisome | 38.53 | 44.06 |
| TraesCS7D01G072200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 46.48 | 43.8 |
| Zm00001d045427_P001 | Maize | cytosol, nucleus, plasma membrane | 45.26 | 43.4 |
| TraesCS7A01G076500.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 45.87 | 43.35 |
| EER89149 | Sorghum | cytosol, nucleus, plastid | 46.18 | 43.27 |
| CDY70947 | Canola | plastid | 33.95 | 42.53 |
| TraesCS4A01G374700.1 | Wheat | nucleus | 45.57 | 42.33 |
| CDY14862 | Canola | plastid | 33.64 | 42.15 |
| CDY21124 | Canola | cytosol, endoplasmic reticulum, peroxisome | 36.09 | 40.97 |
| CDY64701 | Canola | nucleus | 38.84 | 40.84 |
| CDX75499 | Canola | cytosol, nucleus, peroxisome | 37.61 | 40.73 |
| CDY30003 | Canola | cytosol, nucleus, peroxisome, plastid | 35.78 | 40.48 |
| CDX69136 | Canola | cytosol, nucleus, peroxisome | 37.31 | 40.4 |
| CDY49327 | Canola | cytosol, endoplasmic reticulum, nucleus | 38.53 | 40.13 |
| CDX84222 | Canola | cytosol | 23.55 | 40.1 |
| CDY31677 | Canola | cytosol | 24.16 | 40.1 |
| CDY20404 | Canola | nucleus | 32.72 | 39.48 |
| CDX87591 | Canola | nucleus | 33.64 | 39.29 |
| CDX96613 | Canola | nucleus | 36.09 | 39.2 |
| CDX88286 | Canola | cytosol, endoplasmic reticulum, nucleus | 33.03 | 39.13 |
| CDY45266 | Canola | plastid | 24.46 | 39.02 |
| CDY68242 | Canola | plastid | 35.17 | 38.72 |
| CDY41211 | Canola | plastid | 34.86 | 38.64 |
| CDY45983 | Canola | nucleus | 33.95 | 38.54 |
| CDX76085 | Canola | plastid | 35.78 | 38.11 |
| CDY21451 | Canola | cytosol | 28.13 | 37.55 |
| CDY60321 | Canola | plastid | 33.95 | 37.5 |
| CDY02949 | Canola | plastid | 35.17 | 37.46 |
| CDY53687 | Canola | nucleus | 33.95 | 37.25 |
| CDX83182 | Canola | cytosol | 27.83 | 37.14 |
| CDY31511 | Canola | nucleus | 30.28 | 36.8 |
| CDY33658 | Canola | nucleus | 32.72 | 36.64 |
| CDX68095 | Canola | cytosol | 29.66 | 35.93 |
| CDY31858 | Canola | nucleus | 29.66 | 35.53 |
| CDY29494 | Canola | nucleus | 29.66 | 35.4 |
| CDY01347 | Canola | nucleus | 29.36 | 35.29 |
| CDX85952 | Canola | cytosol | 29.36 | 35.29 |
| CDY65376 | Canola | nucleus | 25.38 | 30.18 |
Protein Annotations
| EnsemblPlants:CDY04391 | EnsemblPlantsGene:GSBRNA2T00118380001 | Gene3D:3.30.1330.80 | InterPro:AT-hook_nuclear | InterPro:IPR005175 | InterPro:PPC_dom |
| ncoils:Coil | PANTHER:PTHR31100 | PANTHER:PTHR31100:SF15 | PFAM:PF03479 | PFscan:PS51742 | PIRSF:PIRSF016021 |
| ProteinID:CDY04391 | ProteinID:CDY04391.1 | SEG:seg | SUPFAM:SSF117856 | UniParc:UPI0004EF17B4 | MapMan:35.1 |
Description
BnaC02g28570DAT-hook motif nuclear-localized protein 26 [Source:Projected from Arabidopsis thaliana (AT4G12050) UniProtKB/Swiss-Prot;Acc:Q9SZ70]
Coordinates
chrLK031953:-:175972..176955
Molecular Weight (calculated)
34543.8 Da
IEP (calculated)
7.732
GRAVY (calculated)
-0.624
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPAQSHGSQ SSLPSPFHAR DFQLHLQQQH HHHPQQQQFF LHKNQQQRNP DQHDHEQQGG SMNRTINKMD SEETSDNMEN IANNNSGSKG KEMSLLGGEG
101: ASGGGGRGEQ MTRRPRGRPA GSKNKPKAPI IITRDSVNAL RTHVMEIGDG CDIVDCMATF ARRHQRGVCV MSGTGSVTNV TIRQSGSPPG SVISLHGRFE
201: ILSLSGSFLP PPAPPAATGL SVYLAGGQGQ VVGGSVVGPL LCSGPVVVMA ASFSNAAYQR LPLEEDEMQT PGGGGGGGGG MGSPPMMGQQ QAMAAAQGLP
301: PNLLGSVQLP PQQQNDQPYW PTGRPPY
101: ASGGGGRGEQ MTRRPRGRPA GSKNKPKAPI IITRDSVNAL RTHVMEIGDG CDIVDCMATF ARRHQRGVCV MSGTGSVTNV TIRQSGSPPG SVISLHGRFE
201: ILSLSGSFLP PPAPPAATGL SVYLAGGQGQ VVGGSVVGPL LCSGPVVVMA ASFSNAAYQR LPLEEDEMQT PGGGGGGGGG MGSPPMMGQQ QAMAAAQGLP
301: PNLLGSVQLP PQQQNDQPYW PTGRPPY
001: MDPVQSHGSQ SSLPPPFHAR DFQLHLQQQQ QHQQQHQQQQ QQQFFLHHHQ QPQRNLDQDH EQQGGSILNR SIKMDREETS DNMDNIANTN SGSEGKEMSL
101: HGGEGGSGGG GSGEQMTRRP RGRPAGSKNK PKAPIIITRD SANALRTHVM EIGDGCDIVD CMATFARRRQ RGVCVMSGTG SVTNVTIRQP GSPPGSVVSL
201: HGRFEILSLS GSFLPPPAPP AATGLSVYLA GGQGQVVGGS VVGPLLCSGP VVVMAASFSN AAYERLPLEE DEMQTPVQGG GGGGGGGGGM GSPPMMGQQQ
301: AMAAMAAAQG LPPNLLGSVQ LPPPQQNDQQ YWSTGRPPY
101: HGGEGGSGGG GSGEQMTRRP RGRPAGSKNK PKAPIIITRD SANALRTHVM EIGDGCDIVD CMATFARRRQ RGVCVMSGTG SVTNVTIRQP GSPPGSVVSL
201: HGRFEILSLS GSFLPPPAPP AATGLSVYLA GGQGQVVGGS VVGPLLCSGP VVVMAASFSN AAYERLPLEE DEMQTPVQGG GGGGGGGGGM GSPPMMGQQQ
301: AMAAMAAAQG LPPNLLGSVQ LPPPQQNDQQ YWSTGRPPY
Arabidopsis Description
AHL26AT-hook motif nuclear-localized protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ70]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.