Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- endoplasmic reticulum 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS4A01G137900.1 | |
| TraesCS4B01G148100.1 | |
| TraesCS4D01G153300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G12050.1 | TraesCS4A01G137900.1 | AT4G26630.1 | 25387881 |
| AT4G12050.1 | TraesCS4B01G148100.1 | AT4G26630.1 | 25387881 |
| AT4G12050.1 | TraesCS4D01G153300.1 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G374700.1 | Wheat | nucleus | 99.42 | 97.73 |
| TraesCS7D01G072200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 97.69 | 97.41 |
| HORVU7Hr1G017700.2 | Barley | nucleus | 94.51 | 93.7 |
| Os06t0136900-01 | Rice | nucleus | 67.63 | 71.34 |
| Zm00001d045427_P001 | Maize | cytosol, nucleus, plasma membrane | 55.78 | 56.6 |
| EER89149 | Sorghum | cytosol, nucleus, plastid | 56.36 | 55.87 |
| Zm00001d036088_P001 | Maize | extracellular | 42.49 | 52.5 |
| TraesCS6A01G176200.1 | Wheat | nucleus | 43.64 | 48.87 |
| TraesCS7A01G299100.1 | Wheat | cytosol, nucleus, plastid | 39.31 | 47.89 |
| AT4G22810.1 | Thale cress | nucleus | 44.8 | 47.84 |
| CDX82978 | Canola | cytosol, nucleus, plastid | 43.35 | 47.62 |
| CDY41289 | Canola | nucleus | 43.06 | 47.3 |
| CDX98771 | Canola | nucleus | 43.06 | 47.0 |
| TraesCS4A01G094700.1 | Wheat | cytosol, nucleus, plastid | 34.68 | 46.88 |
| CDY04391 | Canola | nucleus | 43.35 | 45.87 |
| Bra019355.1-P | Field mustard | nucleus | 43.35 | 45.87 |
| CDX94128 | Canola | nucleus | 43.35 | 45.87 |
| AT4G12050.1 | Thale cress | cytosol, nucleus, plastid | 44.8 | 45.72 |
| Bra013649.1-P | Field mustard | nucleus | 43.06 | 45.71 |
| TraesCS6A01G053800.1 | Wheat | nucleus | 36.71 | 45.04 |
| TraesCS4A01G312400.1 | Wheat | nucleus | 36.99 | 44.91 |
| TraesCS2A01G449300.1 | Wheat | cytosol, nucleus, peroxisome | 39.31 | 43.17 |
| TraesCS6A01G399200.1 | Wheat | cytosol, extracellular, peroxisome | 35.84 | 42.76 |
| TraesCS6A01G277700.1 | Wheat | plastid | 40.17 | 42.51 |
| TraesCS3A01G167300.1 | Wheat | plastid | 25.14 | 40.85 |
| TraesCS1A01G043100.1 | Wheat | mitochondrion, nucleus | 37.57 | 40.12 |
| TraesCS7A01G225700.1 | Wheat | nucleus | 36.99 | 39.63 |
| TraesCS7A01G395400.1 | Wheat | cytosol | 32.08 | 38.41 |
| TraesCS3A01G490800.1 | Wheat | cytosol | 24.28 | 29.79 |
| TraesCS5A01G245800.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 28.03 | 28.53 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G076500.1 | EnsemblPlantsGene:TraesCS7A01G076500 | Gene3D:3.30.1330.80 | InterPro:AT-hook_nuclear | InterPro:IPR005175 | InterPro:PPC_dom |
| PANTHER:PTHR31100 | PANTHER:PTHR31100:SF2 | PFAM:PF03479 | PFscan:PS51742 | PIRSF:PIRSF016021 | SEG:seg |
| SUPFAM:SSF117856 | TIGR:cd11378 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr7A:+:41873179..41874219
Molecular Weight (calculated)
35083.0 Da
IEP (calculated)
6.964
GRAVY (calculated)
-0.354
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPVAAAAHG GGHHFGPPVG TFHPFHGHFP GQQQHPAFQH FQDHHHQLLG GMLAKQELVD ESNTTINSGG SNNGNSGGEG EQHMGGGGGG GGGSAQQQQQ
101: HAGGGGGEEG QQQQQQALAV MRRPRGRPAG SKNKPKPPVI ITRDSASALR AHVLEVAAGC DVVDCVAAFA RRRQVGVCVL SGTGAVANVS VRQPGGAVAT
201: LAGCFDILSL SGSFLPPPAP PSATGLTVYV SGGQGQVVGG SVAGALVASG PVVIMAASFG NASYERLPLD DEEPSAAQGL AQAHSSPPPL PLPTHQLQQQ
301: HQPSSSLAQA PDHHLPHNLM NGLQQLPGDP YGWTTPGGSG GRVSPY
101: HAGGGGGEEG QQQQQQALAV MRRPRGRPAG SKNKPKPPVI ITRDSASALR AHVLEVAAGC DVVDCVAAFA RRRQVGVCVL SGTGAVANVS VRQPGGAVAT
201: LAGCFDILSL SGSFLPPPAP PSATGLTVYV SGGQGQVVGG SVAGALVASG PVVIMAASFG NASYERLPLD DEEPSAAQGL AQAHSSPPPL PLPTHQLQQQ
301: HQPSSSLAQA PDHHLPHNLM NGLQQLPGDP YGWTTPGGSG GRVSPY
001: MDQVSRSLPP PFLSRDLHLH PHHQFQHQQQ QQQQNHGHDI DQHRIGGLKR DRDADIDPNE HSSAGKDQST PGSGGESGGG GGGDNHITRR PRGRPAGSKN
101: KPKPPIIITR DSANALKSHV MEVANGCDVM ESVTVFARRR QRGICVLSGN GAVTNVTIRQ PASVPGGGSS VVNLHGRFEI LSLSGSFLPP PAPPAASGLT
201: IYLAGGQGQV VGGSVVGPLM ASGPVVIMAA SFGNAAYERL PLEEDDQEEQ TAGAVANNID GNATMGGGTQ TQTQTQQQQQ QQLMQDPTSF IQGLPPNLMN
301: SVQLPAEAYW GTPRPSF
101: KPKPPIIITR DSANALKSHV MEVANGCDVM ESVTVFARRR QRGICVLSGN GAVTNVTIRQ PASVPGGGSS VVNLHGRFEI LSLSGSFLPP PAPPAASGLT
201: IYLAGGQGQV VGGSVVGPLM ASGPVVIMAA SFGNAAYERL PLEEDDQEEQ TAGAVANNID GNATMGGGTQ TQTQTQQQQQ QQLMQDPTSF IQGLPPNLMN
301: SVQLPAEAYW GTPRPSF
Arabidopsis Description
AHL22AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VXD2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.