Factsheet for Bra019355.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98771	Canola	nucleus	96.94	100.0
CDX94128	Canola	nucleus	98.78	98.78
Bra013649.1-P	Field mustard	nucleus	92.05	92.33
AT4G22810.1	Thale cress	nucleus	88.69	89.51
Bra039338.1-P	Field mustard	nucleus	56.27	59.74
Bra004911.1-P	Field mustard	nucleus	54.43	57.79
Bra012639.1-P	Field mustard	cytosol	44.65	50.17
Bra040183.1-P	Field mustard	cytosol	44.95	50.17
Bra017324.1-P	Field mustard	cytosol, nucleus, peroxisome	42.51	48.6
Os06t0136900-01	Rice	nucleus	48.01	47.87
Bra005355.1-P	Field mustard	cytosol	41.28	47.54
Bra000281.1-P	Field mustard	plastid	36.7	45.98
HORVU7Hr1G017700.2	Barley	nucleus	48.32	45.27
Bra004732.1-P	Field mustard	plastid	36.09	45.21
TraesCS7D01G072200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	46.79	44.09
Zm00001d045427_P001	Maize	cytosol, nucleus, plasma membrane	45.57	43.7
Zm00001d036088_P001	Maize	extracellular	37.31	43.57
TraesCS7A01G076500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	45.87	43.35
EER89149	Sorghum	cytosol, nucleus, plastid	45.57	42.69
Bra040184.1-P	Field mustard	cytosol, nucleus, peroxisome	40.98	42.68
TraesCS4A01G374700.1	Wheat	nucleus	45.87	42.61
Bra016853.1-P	Field mustard	plastid	33.95	42.53
Bra023007.1-P	Field mustard	cytosol, nucleus, peroxisome	42.81	41.3
Bra011612.1-P	Field mustard	cytosol, nucleus, peroxisome	37.92	41.06
Bra015738.1-P	Field mustard	nucleus	35.78	40.62
Bra008262.1-P	Field mustard	nucleus	35.47	40.42
Bra040135.1-P	Field mustard	cytosol, nucleus, peroxisome	36.39	40.34
Bra026211.1-P	Field mustard	plastid	25.08	40.0
Bra012256.1-P	Field mustard	nucleus	37.31	39.48
Bra003717.1-P	Field mustard	nucleus	34.25	39.02
Bra016444.1-P	Field mustard	nucleus	37.0	38.41
Bra007176.1-P	Field mustard	plastid	34.86	38.38
Bra003217.1-P	Field mustard	nucleus	34.25	37.58
Bra014735.1-P	Field mustard	plastid	34.86	37.13
Bra025854.1-P	Field mustard	nucleus	31.8	36.36
Bra000593.1-P	Field mustard	cytosol	27.22	33.84

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	EnsemblPlantsGene:Bra019355	EnsemblPlants:Bra019355.1	EnsemblPlants:Bra019355.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR005175	UniProt:M4DS62	PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742
PANTHER:PTHR31100	PANTHER:PTHR31100:SF15	SUPFAM:SSF117856	UniParc:UPI0002540E04	SEG:seg	:

Description

AT4G22810 (E=4e-093) | DNA-binding protein-related

Coordinates

chrA03:+:24740401..24741384

Molecular Weight (calculated)

34365.1 Da

IEP (calculated)

6.648

GRAVY (calculated)

-0.698

Length

327 amino acids

Sequence
(BLAST)

001: MDGTQSSLPP PFHSRDFQLH LQQQQQQQQE FFLHHHQQQR NQTDQDDQQG GGGINRQIKM DREETSDNID NMANNSGSEG KDTNQGEGGS GGGGGSGGDQ
101: MTRRPRGRPA GSKNKPKPPI IITRDSANAL RTHVMEIGDG CDLVDSVATF ARRRQRGVCV MSGTGNVTNV TIRQPGSPSP GSVVSLHGRF EILSLSGSFL
201: PPPAPPNATG LSVYLAGGQG QVVGGSVVGP LLCAGPVVVM AASFSNAAYE RLPLEEDEMQ TPVHGGGGGG GGGSMESPPM MGGQMPHQQQ AMSAHQGLPP
301: NLLGGSAHQG LPQHDNQPYW STGRPSF

Best Arabidopsis Sequence Match ( AT4G22810.1 )
(BLAST)

001: MDPVQSHGSQ SSLPPPFHAR DFQLHLQQQQ QEFFLHHHQQ QRNQTDGDQQ GGSGGNRQIK MDREETSDNI DNIANNSGSE GKDIDIHGGS GEGGGGSGGD
101: HQMTRRPRGR PAGSKNKPKP PIIITRDSAN ALRTHVMEIG DGCDLVESVA TFARRRQRGV CVMSGTGNVT NVTIRQPGSH PSPGSVVSLH GRFEILSLSG
201: SFLPPPAPPT ATGLSVYLAG GQGQVVGGSV VGPLLCAGPV VVMAASFSNA AYERLPLEED EMQTPVHGGG GGGSLESPPM MGQQLQHQQQ AMSGHQGLPP
301: NLLGSVQLQQ QHDQSYWSTG RPPY

Arabidopsis Description

AHL24AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178V625]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.