CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91265
OQU91413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12050.1	EER91265	AT4G26630.1	25387881
AT4G12050.1	OQU91413	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045427_P001	Maize	cytosol, nucleus, plasma membrane	81.38	83.28
Zm00001d036088_P001	Maize	extracellular	51.58	64.29
Os06t0136900-01	Rice	nucleus	55.3	58.84
TraesCS7A01G076500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	55.87	56.36
TraesCS7D01G072200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	55.87	56.2
HORVU7Hr1G017700.2	Barley	nucleus	55.87	55.87
TraesCS4A01G374700.1	Wheat	nucleus	56.16	55.68
KXG25365	Sorghum	nucleus	37.54	48.52
KXG24494	Sorghum	nucleus	40.69	47.65
AT4G22810.1	Thale cress	nucleus	43.27	46.6
CDY04391	Canola	nucleus	43.27	46.18
EES04848	Sorghum	nucleus	43.27	46.18
AT4G12050.1	Thale cress	cytosol, nucleus, plastid	44.7	46.02
CDX98771	Canola	nucleus	41.55	45.74
CDX82978	Canola	cytosol, nucleus, plastid	41.26	45.71
Bra019355.1-P	Field mustard	nucleus	42.69	45.57
CDY41289	Canola	nucleus	40.97	45.4
CDX94128	Canola	nucleus	42.41	45.26
Bra013649.1-P	Field mustard	nucleus	41.83	44.79
EES12751	Sorghum	cytosol, nucleus, peroxisome	39.83	44.55
EER95114	Sorghum	nucleus	33.52	43.01
EER88668	Sorghum	cytosol	32.66	42.22
EES05630	Sorghum	cytosol, mitochondrion, nucleus, plastid	38.4	40.85
OQU85972	Sorghum	cytosol	33.81	39.73
KXG19929	Sorghum	nucleus	34.1	37.42
OQU88209	Sorghum	peroxisome	25.79	36.0
EER99980	Sorghum	plastid	21.2	35.07
KXG25333	Sorghum	cytosol	28.37	29.73
OQU89633	Sorghum	cytosol	29.23	28.81

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	EntrezGene:8068412	UniProt:C5Z3G0	EnsemblPlants:EER89149	ProteinID:EER89149
ProteinID:EER89149.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175
PFAM:PF03479	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100	PANTHER:PTHR31100:SF2	EnsemblPlantsGene:SORBI_3010G027300
SUPFAM:SSF117856	unigene:Sbi.11685	UniParc:UPI0001A89AA7	RefSeq:XP_002437782.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:-:2204328..2206240

Molecular Weight (calculated)

35003.3 Da

IEP (calculated)

6.831

GRAVY (calculated)

-0.139

Length

349 amino acids

Sequence
(BLAST)

001: MDPAVAAAAA HGGGHHFAQP VAPFHHPFGG LGGHHHHLFP GQQHPAFQHF QEQQRQLELL GAGGGVPGGV NKQELGVGGD DSNNTINSAG SNGSGDGAVA
101: GADQQAGGGD GDQQQQQHAL VMRRPRGRPA GSKNKPKPPV IITRDSASAL RAHVLEVAAG CDVVDSIAGF ARRRQVGVCV LSASGSVANV CIRHSGAAPG
201: AVVTMAGCFD ILSLSGSFLP PPAPPAATGL TVYLSGGQGQ VVGGTVAGPL LASGPVVIVA ACFGNAAYER LPLDDDEPPQ QQLLQQALPP PQGMAGASSS
301: SPPPPLSLPG QHPLADQLPH SLMNGLPLPA DAYAWANPGG SGAGRVAPY

Best Arabidopsis Sequence Match ( AT2G45430.1 )
(BLAST)

001: MDQVSRSLPP PFLSRDLHLH PHHQFQHQQQ QQQQNHGHDI DQHRIGGLKR DRDADIDPNE HSSAGKDQST PGSGGESGGG GGGDNHITRR PRGRPAGSKN
101: KPKPPIIITR DSANALKSHV MEVANGCDVM ESVTVFARRR QRGICVLSGN GAVTNVTIRQ PASVPGGGSS VVNLHGRFEI LSLSGSFLPP PAPPAASGLT
201: IYLAGGQGQV VGGSVVGPLM ASGPVVIMAA SFGNAAYERL PLEEDDQEEQ TAGAVANNID GNATMGGGTQ TQTQTQQQQQ QQLMQDPTSF IQGLPPNLMN
301: SVQLPAEAYW GTPRPSF

Arabidopsis Description

AHL22AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VXD2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.