Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019355.1-P | Field mustard | nucleus | 98.78 | 98.78 |
| CDX98771 | Canola | nucleus | 95.72 | 98.74 |
| CDX82978 | Canola | cytosol, nucleus, plastid | 89.3 | 92.7 |
| CDY41289 | Canola | nucleus | 88.99 | 92.38 |
| AT4G22810.1 | Thale cress | nucleus | 88.38 | 89.2 |
| CDY04391 | Canola | nucleus | 77.68 | 77.68 |
| CDY37040 | Canola | nucleus | 56.27 | 59.74 |
| CDY18931 | Canola | nucleus | 56.27 | 59.55 |
| CDY27387 | Canola | nucleus | 56.57 | 59.29 |
| CDX74739 | Canola | nucleus | 55.66 | 58.71 |
| CDX90445 | Canola | plastid | 44.04 | 52.55 |
| CDX79599 | Canola | cytosol, peroxisome, plastid | 42.2 | 50.55 |
| CDY72485 | Canola | nucleus | 42.2 | 50.55 |
| CDX78802 | Canola | cytosol | 44.95 | 50.52 |
| CDY54780 | Canola | cytosol | 44.65 | 50.0 |
| CDY59041 | Canola | cytosol, nucleus, peroxisome | 42.51 | 48.6 |
| Os06t0136900-01 | Rice | nucleus | 48.01 | 47.87 |
| CDY23160 | Canola | cytosol, nucleus, vacuole | 40.06 | 46.95 |
| CDY12779 | Canola | cytosol, nucleus, vacuole | 40.37 | 46.81 |
| CDX79838 | Canola | plastid | 36.09 | 45.38 |
| CDY53650 | Canola | plastid | 36.09 | 45.38 |
| HORVU7Hr1G017700.2 | Barley | nucleus | 48.32 | 45.27 |
| TraesCS7D01G072200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 46.79 | 44.09 |
| CDY21124 | Canola | cytosol, endoplasmic reticulum, peroxisome | 38.53 | 43.75 |
| Zm00001d036088_P001 | Maize | extracellular | 37.31 | 43.57 |
| CDY64701 | Canola | nucleus | 41.28 | 43.41 |
| Zm00001d045427_P001 | Maize | cytosol, nucleus, plasma membrane | 45.26 | 43.4 |
| TraesCS7A01G076500.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 45.87 | 43.35 |
| CDY30003 | Canola | cytosol, nucleus, peroxisome, plastid | 38.23 | 43.25 |
| CDY31677 | Canola | cytosol | 25.99 | 43.15 |
| CDX84222 | Canola | cytosol | 25.08 | 42.71 |
| CDY49327 | Canola | cytosol, endoplasmic reticulum, nucleus | 40.98 | 42.68 |
| TraesCS4A01G374700.1 | Wheat | nucleus | 45.87 | 42.61 |
| CDY70947 | Canola | plastid | 33.95 | 42.53 |
| CDY14862 | Canola | plastid | 33.95 | 42.53 |
| EER89149 | Sorghum | cytosol, nucleus, plastid | 45.26 | 42.41 |
| CDX87591 | Canola | nucleus | 36.09 | 42.14 |
| CDY20404 | Canola | nucleus | 34.86 | 42.07 |
| CDX75499 | Canola | cytosol, nucleus, peroxisome | 38.23 | 41.39 |
| CDY45983 | Canola | nucleus | 36.39 | 41.32 |
| CDX69136 | Canola | cytosol, nucleus, peroxisome | 37.92 | 41.06 |
| CDX88286 | Canola | cytosol, endoplasmic reticulum, nucleus | 34.56 | 40.94 |
| CDX96613 | Canola | nucleus | 37.0 | 40.2 |
| CDY45266 | Canola | plastid | 25.08 | 40.0 |
| CDY31511 | Canola | nucleus | 31.8 | 38.66 |
| CDY41211 | Canola | plastid | 34.86 | 38.64 |
| CDX68095 | Canola | cytosol | 31.8 | 38.52 |
| CDY68242 | Canola | plastid | 34.86 | 38.38 |
| CDY31858 | Canola | nucleus | 31.8 | 38.1 |
| CDY33658 | Canola | nucleus | 33.95 | 38.01 |
| CDY01347 | Canola | nucleus | 31.5 | 37.87 |
| CDX85952 | Canola | cytosol | 31.19 | 37.5 |
| CDY02949 | Canola | plastid | 35.17 | 37.46 |
| CDY29494 | Canola | nucleus | 31.19 | 37.23 |
| CDY60321 | Canola | plastid | 33.64 | 37.16 |
| CDX76085 | Canola | plastid | 34.86 | 37.13 |
| CDY53687 | Canola | nucleus | 33.64 | 36.91 |
| CDY21451 | Canola | cytosol | 27.22 | 36.33 |
| CDX83182 | Canola | cytosol | 26.91 | 35.92 |
| CDY65376 | Canola | nucleus | 25.08 | 29.82 |
Protein Annotations
| EnsemblPlants:CDX94128 | EnsemblPlantsGene:GSBRNA2T00157045001 | Gene3D:3.30.1330.80 | InterPro:AT-hook_nuclear | InterPro:IPR005175 | InterPro:PPC_dom |
| PANTHER:PTHR31100 | PANTHER:PTHR31100:SF15 | PFAM:PF03479 | PFscan:PS51742 | PIRSF:PIRSF016021 | ProteinID:CDX94128 |
| ProteinID:CDX94128.1 | SEG:seg | SUPFAM:SSF117856 | UniParc:UPI0004EE5264 | MapMan:35.1 | : |
Description
BnaC07g37620D
Coordinates
chrLK031879:+:873039..874022
Molecular Weight (calculated)
34434.2 Da
IEP (calculated)
6.796
GRAVY (calculated)
-0.721
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGTQSSLPP PFHSRDFQLH LQQQQQQQQQ EFFLHHHQQQ RNQTDQDDQQ GGGRNRQIKM DREETSDSID NMANNSGSEG KDTNQGEGGS GGGGGSGGDQ
101: MTRRPRGRPA GSKNKPKPPI IITRDSANAL RTHVMEIGDG CDLVDSVATF ARRRQRGVCV MSGTGNVTNV TIRQPGSPSP GSVVSLHGRF EILSLSGSFL
201: PPPAPPNATG LSVYLAGGQG QVVGGSVVGP LLCAGPVVVM AASFSNAAYE RLPLEEDEMQ TPVHGGGGGG GGGSMESPPM MGGQLPHQQQ AMSAHQGLPP
301: NLLGGSAHQG LPQHDNQPYW STGRPSF
101: MTRRPRGRPA GSKNKPKPPI IITRDSANAL RTHVMEIGDG CDLVDSVATF ARRRQRGVCV MSGTGNVTNV TIRQPGSPSP GSVVSLHGRF EILSLSGSFL
201: PPPAPPNATG LSVYLAGGQG QVVGGSVVGP LLCAGPVVVM AASFSNAAYE RLPLEEDEMQ TPVHGGGGGG GGGSMESPPM MGGQLPHQQQ AMSAHQGLPP
301: NLLGGSAHQG LPQHDNQPYW STGRPSF
001: MDPVQSHGSQ SSLPPPFHAR DFQLHLQQQQ QEFFLHHHQQ QRNQTDGDQQ GGSGGNRQIK MDREETSDNI DNIANNSGSE GKDIDIHGGS GEGGGGSGGD
101: HQMTRRPRGR PAGSKNKPKP PIIITRDSAN ALRTHVMEIG DGCDLVESVA TFARRRQRGV CVMSGTGNVT NVTIRQPGSH PSPGSVVSLH GRFEILSLSG
201: SFLPPPAPPT ATGLSVYLAG GQGQVVGGSV VGPLLCAGPV VVMAASFSNA AYERLPLEED EMQTPVHGGG GGGSLESPPM MGQQLQHQQQ AMSGHQGLPP
301: NLLGSVQLQQ QHDQSYWSTG RPPY
101: HQMTRRPRGR PAGSKNKPKP PIIITRDSAN ALRTHVMEIG DGCDLVESVA TFARRRQRGV CVMSGTGNVT NVTIRQPGSH PSPGSVVSLH GRFEILSLSG
201: SFLPPPAPPT ATGLSVYLAG GQGQVVGGSV VGPLLCAGPV VVMAASFSNA AYERLPLEED EMQTPVHGGG GGGSLESPPM MGQQLQHQQQ AMSGHQGLPP
301: NLLGSVQLQQ QHDQSYWSTG RPPY
Arabidopsis Description
AHL24AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178V625]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.