Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011612.1-P | Field mustard | cytosol, nucleus, peroxisome | 98.68 | 98.68 |
| CDX75499 | Canola | cytosol, nucleus, peroxisome | 98.01 | 98.01 |
| AT4G35390.1 | Thale cress | cytosol | 90.4 | 91.3 |
| VIT_03s0038g04110.t01 | Wine grape | nucleus | 58.28 | 60.9 |
| CDY20404 | Canola | nucleus | 43.71 | 48.71 |
| CDX87591 | Canola | nucleus | 44.7 | 48.21 |
| CDY45983 | Canola | nucleus | 45.03 | 47.22 |
| CDX79599 | Canola | cytosol, peroxisome, plastid | 42.05 | 46.52 |
| CDY31858 | Canola | nucleus | 42.05 | 46.52 |
| CDX96613 | Canola | nucleus | 46.36 | 46.51 |
| CDY31511 | Canola | nucleus | 41.39 | 46.47 |
| CDX88286 | Canola | cytosol, endoplasmic reticulum, nucleus | 42.38 | 46.38 |
| CDY72485 | Canola | nucleus | 41.72 | 46.15 |
| CDX90445 | Canola | plastid | 41.72 | 45.99 |
| CDY01347 | Canola | nucleus | 41.39 | 45.96 |
| CDX79838 | Canola | plastid | 39.07 | 45.38 |
| CDY53650 | Canola | plastid | 39.07 | 45.38 |
| CDY29494 | Canola | nucleus | 41.06 | 45.26 |
| CDY33658 | Canola | nucleus | 43.71 | 45.21 |
| CDX68095 | Canola | cytosol | 40.07 | 44.81 |
| CDX78802 | Canola | cytosol | 42.72 | 44.33 |
| CDY54780 | Canola | cytosol | 42.72 | 44.18 |
| CDX85952 | Canola | cytosol | 39.74 | 44.12 |
| CDY59041 | Canola | cytosol, nucleus, peroxisome | 41.39 | 43.71 |
| CDY14862 | Canola | plastid | 36.76 | 42.53 |
| CDY70947 | Canola | plastid | 36.76 | 42.53 |
| CDY18931 | Canola | nucleus | 42.72 | 41.75 |
| CDX74739 | Canola | nucleus | 42.72 | 41.61 |
| CDY37040 | Canola | nucleus | 42.38 | 41.56 |
| CDX84222 | Canola | cytosol | 26.16 | 41.15 |
| CDY27387 | Canola | nucleus | 42.38 | 41.03 |
| CDY31677 | Canola | cytosol | 26.49 | 40.61 |
| CDY23160 | Canola | cytosol, nucleus, vacuole | 36.76 | 39.78 |
| CDY12779 | Canola | cytosol, nucleus, vacuole | 36.76 | 39.36 |
| CDX98771 | Canola | nucleus | 41.06 | 39.12 |
| CDY41289 | Canola | nucleus | 40.73 | 39.05 |
| CDX82978 | Canola | cytosol, nucleus, plastid | 40.73 | 39.05 |
| CDY64701 | Canola | nucleus | 39.07 | 37.94 |
| CDX94128 | Canola | nucleus | 41.06 | 37.92 |
| CDY04391 | Canola | nucleus | 40.4 | 37.31 |
| CDY49327 | Canola | cytosol, endoplasmic reticulum, nucleus | 38.74 | 37.26 |
| CDY21124 | Canola | cytosol, endoplasmic reticulum, peroxisome | 35.43 | 37.15 |
| CDY30003 | Canola | cytosol, nucleus, peroxisome, plastid | 35.43 | 37.02 |
| CDY41211 | Canola | plastid | 36.09 | 36.95 |
| CDY21451 | Canola | cytosol | 29.8 | 36.73 |
| CDX83182 | Canola | cytosol | 29.8 | 36.73 |
| CDY68242 | Canola | plastid | 36.09 | 36.7 |
| CDY45266 | Canola | plastid | 24.83 | 36.59 |
| CDY60321 | Canola | plastid | 35.76 | 36.49 |
| CDY53687 | Canola | nucleus | 35.76 | 36.24 |
| CDY02949 | Canola | plastid | 36.09 | 35.5 |
| CDX76085 | Canola | plastid | 35.1 | 34.53 |
| CDY65376 | Canola | nucleus | 25.17 | 27.64 |
Protein Annotations
| EnsemblPlants:CDX69136 | EnsemblPlantsGene:GSBRNA2T00130923001 | Gene3D:3.30.1330.80 | InterPro:AT-hook_nuclear | InterPro:IPR005175 | InterPro:PPC_dom |
| PANTHER:PTHR31100 | PANTHER:PTHR31100:SF16 | PFAM:PF03479 | PFscan:PS51742 | PIRSF:PIRSF016021 | ProteinID:CDX69136 |
| ProteinID:CDX69136.1 | SEG:seg | SUPFAM:SSF117856 | UniParc:UPI0004EEC6D7 | MapMan:35.1 | : |
Description
BnaC01g03170D
Coordinates
chrLK031789:+:3126854..3127762
Molecular Weight (calculated)
30479.8 Da
IEP (calculated)
7.129
GRAVY (calculated)
-0.333
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGYMHPLLG QELHLQRPED SRTPPDHNHM ELNRSGADEA KGETTPTGGG AASSATASGS SSGRRPRGRP AGSKNKPKPP TIITRDSPNV LRSHVLEVTS
101: GSDISEAVST YATRRGCGVC VLSATGAVTN VTIRQPAAPT GGGVITLHGR FEILSLTGTA LPPPAPPGAG GLTVYLAGGQ GQVVGGNVAG SLIASGPVVL
201: MAASFANAVY DRLPMEEEET PPPRTTGVQQ PQPAASQSSE VTRSEAQMCE SNMGGRNGGV AFYNLGMNMN NFQFSGGDIF GLSGGGGGGG GGDGGGVTRP
301: AF
101: GSDISEAVST YATRRGCGVC VLSATGAVTN VTIRQPAAPT GGGVITLHGR FEILSLTGTA LPPPAPPGAG GLTVYLAGGQ GQVVGGNVAG SLIASGPVVL
201: MAASFANAVY DRLPMEEEET PPPRTTGVQQ PQPAASQSSE VTRSEAQMCE SNMGGRNGGV AFYNLGMNMN NFQFSGGDIF GLSGGGGGGG GGDGGGVTRP
301: AF
001: MSSYMHPLLG QELHLQRPED SRTPPDQNNM ELNRSEADEA KAETTPTGGA TSSATASGSS SGRRPRGRPA GSKNKPKPPT IITRDSPNVL RSHVLEVTSG
101: SDISEAVSTY ATRRGCGVCI ISGTGAVTNV TIRQPAAPAG GGVITLHGRF DILSLTGTAL PPPAPPGAGG LTVYLAGGQG QVVGGNVAGS LIASGPVVLM
201: AASFANAVYD RLPIEEEETP PPRTTGVQQQ QPEASQSSEV TGSGAQACES NLQGGNGGGG VAFYNLGMNM NNFQFSGGDI YGMSGGSGGG GGGATRPAF
101: SDISEAVSTY ATRRGCGVCI ISGTGAVTNV TIRQPAAPAG GGVITLHGRF DILSLTGTAL PPPAPPGAGG LTVYLAGGQG QVVGGNVAGS LIASGPVVLM
201: AASFANAVYD RLPIEEEETP PPRTTGVQQQ QPEASQSSEV TGSGAQACES NLQGGNGGGG VAFYNLGMNM NNFQFSGGDI YGMSGGSGGG GGGATRPAF
Arabidopsis Description
AHL25AT-hook motif nuclear-localized protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q6DBQ1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.