CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039338.1-P	Field mustard	nucleus	97.76	99.03
CDY37040	Canola	nucleus	97.44	98.7
AT2G45430.1	Thale cress	nucleus	94.87	93.38
CDX74739	Canola	nucleus	91.03	91.61
CDY18931	Canola	nucleus	90.38	91.26
VIT_15s0048g00780.t01	Wine grape	nucleus	62.82	65.33
KRH76289	Soybean	nucleus	59.94	64.93
KRH65251	Soybean	nucleus	64.42	64.84
PGSC0003DMT400033248	Potato	nucleus	61.54	62.34
Solyc01g091470.2.1	Tomato	nucleus	60.26	62.25
CDX98771	Canola	nucleus	58.33	57.41
CDX94128	Canola	nucleus	59.29	56.57
CDX82978	Canola	cytosol, nucleus, plastid	56.73	56.19
CDY41289	Canola	nucleus	56.41	55.87
GSMUA_Achr1P19850_001	Banana	nucleus	54.17	55.05
CDY04391	Canola	nucleus	57.05	54.43
CDX90445	Canola	plastid	47.44	54.01
CDX78802	Canola	cytosol	48.4	51.89
CDY54780	Canola	cytosol	48.08	51.37
CDX79599	Canola	cytosol, peroxisome, plastid	42.31	48.35
CDY72485	Canola	nucleus	41.99	47.99
CDY59041	Canola	cytosol, nucleus, peroxisome	42.95	46.85
CDY23160	Canola	cytosol, nucleus, vacuole	41.03	45.88
CDY53650	Canola	plastid	38.14	45.77
CDX79838	Canola	plastid	38.14	45.77
CDY12779	Canola	cytosol, nucleus, vacuole	41.35	45.74
CDY21124	Canola	cytosol, endoplasmic reticulum, peroxisome	40.71	44.1
CDY64701	Canola	nucleus	43.91	44.05
CDY49327	Canola	cytosol, endoplasmic reticulum, nucleus	44.23	43.95
CDX84222	Canola	cytosol	26.92	43.75
CDY70947	Canola	plastid	36.54	43.68
CDY30003	Canola	cytosol, nucleus, peroxisome, plastid	40.38	43.6
CDX87591	Canola	nucleus	39.1	43.57
CDY14862	Canola	plastid	36.22	43.3
CDY68242	Canola	plastid	41.03	43.1
CDY41211	Canola	plastid	40.71	43.05
CDY20404	Canola	nucleus	37.18	42.8
CDX88286	Canola	cytosol, endoplasmic reticulum, nucleus	37.5	42.39
CDX69136	Canola	cytosol, nucleus, peroxisome	41.03	42.38
CDY31677	Canola	cytosol	26.6	42.13
CDX75499	Canola	cytosol, nucleus, peroxisome	40.71	42.05
CDY45983	Canola	nucleus	38.78	42.01
CDX76085	Canola	plastid	41.03	41.69
CDY60321	Canola	plastid	39.42	41.55
GSMUA_Achr3P11300_001	Banana	nucleus	30.45	41.48
CDY02949	Canola	plastid	40.71	41.37
CDY53687	Canola	nucleus	39.1	40.94
CDX68095	Canola	cytosol	34.94	40.37
CDX96613	Canola	nucleus	38.78	40.2
CDY45266	Canola	plastid	26.28	40.0
CDX85952	Canola	cytosol	34.29	39.34
CDY33658	Canola	nucleus	36.22	38.7
CDY01347	Canola	nucleus	33.01	37.87
CDY31511	Canola	nucleus	32.37	37.55
CDY31858	Canola	nucleus	32.69	37.36
CDY21451	Canola	cytosol	28.53	36.33
CDY29494	Canola	nucleus	31.73	36.13
CDX83182	Canola	cytosol	28.21	35.92
CDY65376	Canola	nucleus	25.96	29.45

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	UniProt:A0A078GQA9	InterPro:AT-hook_nuclear	EnsemblPlants:CDY27387	ProteinID:CDY27387
ProteinID:CDY27387.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00037335001	InterPro:IPR005175	PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742
PANTHER:PTHR31100	PANTHER:PTHR31100:SF2	SUPFAM:SSF117856	UniParc:UPI0004EEC0B4	SEG:seg	:

Description

BnaC04g50180DAT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQA9]

Coordinates

chrLK032203:-:380482..381890

Molecular Weight (calculated)

32651.3 Da

IEP (calculated)

7.011

GRAVY (calculated)

-0.546

Length

312 amino acids

Sequence
(BLAST)

001: MDQVSRSLPP PFLSRDLHLH PHHQFQHQQQ HNHGHDIDQH RIGGLKRDRD TEIDPNEHSS AGKDQNTQGS GGESGGGGGG GGGGGDNHIT RRPRGRPAGS
101: KNKPKPPVII TRDSANALKS HVMEVANGCD VMESVTVFAR RRQRGICVLS GNGAVTNVTI RQPASVPGGG SSVVNLHGRF EILSLSGSFL PPPAPPAASG
201: LTIYLAGGQG QVVGGSVVGP LMASGPVVIM AASFGNAAYE RLPLEEDDQD EQQTAGAVAN NMDGNATMGG GTQTQPQQLM QDPTSFIQGL PPSLMNSQLP
301: AEAYWGTPRP SF

Best Arabidopsis Sequence Match ( AT2G45430.1 )
(BLAST)

001: MDQVSRSLPP PFLSRDLHLH PHHQFQHQQQ QQQQNHGHDI DQHRIGGLKR DRDADIDPNE HSSAGKDQST PGSGGESGGG GGGDNHITRR PRGRPAGSKN
101: KPKPPIIITR DSANALKSHV MEVANGCDVM ESVTVFARRR QRGICVLSGN GAVTNVTIRQ PASVPGGGSS VVNLHGRFEI LSLSGSFLPP PAPPAASGLT
201: IYLAGGQGQV VGGSVVGPLM ASGPVVIMAA SFGNAAYERL PLEEDDQEEQ TAGAVANNID GNATMGGGTQ TQTQTQQQQQ QQLMQDPTSF IQGLPPNLMN
301: SVQLPAEAYW GTPRPSF

Arabidopsis Description

AHL22AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VXD2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.