Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74739 | Canola | nucleus | 98.71 | 98.39 |
| Bra004911.1-P | Field mustard | nucleus | 96.76 | 97.08 |
| CDY37040 | Canola | nucleus | 91.26 | 91.56 |
| CDY27387 | Canola | nucleus | 91.26 | 90.38 |
| AT2G45430.1 | Thale cress | nucleus | 92.56 | 90.22 |
| KRH76289 | Soybean | nucleus | 61.16 | 65.62 |
| VIT_15s0048g00780.t01 | Wine grape | nucleus | 63.11 | 65.0 |
| KRH65251 | Soybean | nucleus | 64.08 | 63.87 |
| PGSC0003DMT400033248 | Potato | nucleus | 62.78 | 62.99 |
| Solyc01g091470.2.1 | Tomato | nucleus | 61.16 | 62.58 |
| CDX98771 | Canola | nucleus | 58.58 | 57.1 |
| CDX94128 | Canola | nucleus | 59.55 | 56.27 |
| CDX82978 | Canola | cytosol, nucleus, plastid | 56.63 | 55.56 |
| GSMUA_Achr1P19850_001 | Banana | nucleus | 55.02 | 55.37 |
| CDY41289 | Canola | nucleus | 56.31 | 55.24 |
| CDY04391 | Canola | nucleus | 57.61 | 54.43 |
| CDX90445 | Canola | plastid | 45.95 | 51.82 |
| CDX78802 | Canola | cytosol | 46.93 | 49.83 |
| CDY54780 | Canola | cytosol | 46.6 | 49.32 |
| CDX79599 | Canola | cytosol, peroxisome, plastid | 42.39 | 47.99 |
| CDY72485 | Canola | nucleus | 42.07 | 47.62 |
| CDY23160 | Canola | cytosol, nucleus, vacuole | 41.75 | 46.24 |
| CDX79838 | Canola | plastid | 38.84 | 46.15 |
| CDY53650 | Canola | plastid | 38.84 | 46.15 |
| CDY59041 | Canola | cytosol, nucleus, peroxisome | 42.72 | 46.15 |
| CDY12779 | Canola | cytosol, nucleus, vacuole | 42.07 | 46.1 |
| CDY64701 | Canola | nucleus | 45.31 | 45.02 |
| CDX87591 | Canola | nucleus | 40.78 | 45.0 |
| CDY20404 | Canola | nucleus | 39.16 | 44.65 |
| CDY49327 | Canola | cytosol, endoplasmic reticulum, nucleus | 45.31 | 44.59 |
| CDY21124 | Canola | cytosol, endoplasmic reticulum, peroxisome | 41.1 | 44.1 |
| CDX88286 | Canola | cytosol, endoplasmic reticulum, nucleus | 39.16 | 43.84 |
| CDY45983 | Canola | nucleus | 40.78 | 43.75 |
| CDY70947 | Canola | plastid | 36.89 | 43.68 |
| CDY30003 | Canola | cytosol, nucleus, peroxisome, plastid | 40.78 | 43.6 |
| CDY68242 | Canola | plastid | 41.75 | 43.43 |
| CDY41211 | Canola | plastid | 41.42 | 43.39 |
| CDY14862 | Canola | plastid | 36.57 | 43.3 |
| CDX84222 | Canola | cytosol | 26.86 | 43.23 |
| CDX69136 | Canola | cytosol, nucleus, peroxisome | 41.75 | 42.72 |
| CDY60321 | Canola | plastid | 40.78 | 42.57 |
| CDX96613 | Canola | nucleus | 41.42 | 42.52 |
| CDX75499 | Canola | cytosol, nucleus, peroxisome | 41.42 | 42.38 |
| CDY53687 | Canola | nucleus | 40.45 | 41.95 |
| CDY31677 | Canola | cytosol | 26.54 | 41.62 |
| CDY02949 | Canola | plastid | 41.1 | 41.37 |
| CDX68095 | Canola | cytosol | 35.92 | 41.11 |
| GSMUA_Achr3P11300_001 | Banana | nucleus | 30.42 | 41.05 |
| CDX76085 | Canola | plastid | 40.78 | 41.04 |
| CDX85952 | Canola | cytosol | 35.28 | 40.07 |
| CDY33658 | Canola | nucleus | 37.86 | 40.07 |
| CDY45266 | Canola | plastid | 26.54 | 40.0 |
| CDY31511 | Canola | nucleus | 34.63 | 39.78 |
| CDY01347 | Canola | nucleus | 34.95 | 39.71 |
| CDY31858 | Canola | nucleus | 34.63 | 39.19 |
| CDY29494 | Canola | nucleus | 33.98 | 38.32 |
| CDY21451 | Canola | cytosol | 29.77 | 37.55 |
| CDX83182 | Canola | cytosol | 29.45 | 37.14 |
| CDY65376 | Canola | nucleus | 26.21 | 29.45 |
Protein Annotations
| Gene3D:3.30.1330.80 | MapMan:35.1 | UniProt:A0A078G0X0 | InterPro:AT-hook_nuclear | EnsemblPlants:CDY18931 | ProteinID:CDY18931 |
| ProteinID:CDY18931.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003680 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00006139001 | InterPro:IPR005175 | PFAM:PF03479 | PIRSF:PIRSF016021 | InterPro:PPC_dom | PFscan:PS51742 |
| PANTHER:PTHR31100 | PANTHER:PTHR31100:SF2 | SUPFAM:SSF117856 | UniParc:UPI0004EE7B7B | SEG:seg | : |
Description
BnaC04g04190DAT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A078G0X0]
Coordinates
chrLK032090:-:383621..384638
Molecular Weight (calculated)
32695.4 Da
IEP (calculated)
6.862
GRAVY (calculated)
-0.546
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQVSRSLPF LSRDLHLHPH HQFQHQQQLH EIDQHRISGL KRDRDTEIDP NEHSPAGKDQ NTPGSGGESG GGGGGDNQIT RRPRGRPAGS KNKPKPPIIV
101: TRDSANALKS HVMEVANGCD VMESVTVFAR RRQRGVCVLS GNGAVTNVTI RQPASVPGGG SSVVNLHGRF EILSLSGSFL PPPAPPAASG LTIYLAGGQG
201: QVVGGSVVGP LMASGPVVIM AASFGNAAYE RLPLEEEDQE EQQTSGAVVN NNNIDGNGTM GGGTQTQQPQ QQQLMQDPTS FIQGLQPNLM SSSVQLPGEA
301: YWGTPRPSF
101: TRDSANALKS HVMEVANGCD VMESVTVFAR RRQRGVCVLS GNGAVTNVTI RQPASVPGGG SSVVNLHGRF EILSLSGSFL PPPAPPAASG LTIYLAGGQG
201: QVVGGSVVGP LMASGPVVIM AASFGNAAYE RLPLEEEDQE EQQTSGAVVN NNNIDGNGTM GGGTQTQQPQ QQQLMQDPTS FIQGLQPNLM SSSVQLPGEA
301: YWGTPRPSF
001: MDQVSRSLPP PFLSRDLHLH PHHQFQHQQQ QQQQNHGHDI DQHRIGGLKR DRDADIDPNE HSSAGKDQST PGSGGESGGG GGGDNHITRR PRGRPAGSKN
101: KPKPPIIITR DSANALKSHV MEVANGCDVM ESVTVFARRR QRGICVLSGN GAVTNVTIRQ PASVPGGGSS VVNLHGRFEI LSLSGSFLPP PAPPAASGLT
201: IYLAGGQGQV VGGSVVGPLM ASGPVVIMAA SFGNAAYERL PLEEDDQEEQ TAGAVANNID GNATMGGGTQ TQTQTQQQQQ QQLMQDPTSF IQGLPPNLMN
301: SVQLPAEAYW GTPRPSF
101: KPKPPIIITR DSANALKSHV MEVANGCDVM ESVTVFARRR QRGICVLSGN GAVTNVTIRQ PASVPGGGSS VVNLHGRFEI LSLSGSFLPP PAPPAASGLT
201: IYLAGGQGQV VGGSVVGPLM ASGPVVIMAA SFGNAAYERL PLEEDDQEEQ TAGAVANNID GNATMGGGTQ TQTQTQQQQQ QQLMQDPTSF IQGLPPNLMN
301: SVQLPAEAYW GTPRPSF
Arabidopsis Description
AHL22AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VXD2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.