Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87591 | Canola | nucleus | 91.67 | 90.36 |
| CDX68095 | Canola | cytosol | 80.8 | 82.59 |
| CDY20404 | Canola | nucleus | 80.8 | 82.29 |
| CDX85952 | Canola | cytosol | 80.8 | 81.99 |
| CDY45983 | Canola | nucleus | 83.7 | 80.21 |
| AT1G76500.1 | Thale cress | nucleus | 85.87 | 78.48 |
| CDX96613 | Canola | nucleus | 75.0 | 68.77 |
| CDY31511 | Canola | nucleus | 65.58 | 67.29 |
| CDY01347 | Canola | nucleus | 66.3 | 67.28 |
| CDY33658 | Canola | nucleus | 71.01 | 67.12 |
| CDY31858 | Canola | nucleus | 66.3 | 67.03 |
| CDY29494 | Canola | nucleus | 66.3 | 66.79 |
| KRH51551 | Soybean | plastid | 40.94 | 55.39 |
| Solyc04g082810.2.1 | Tomato | cytosol, nucleus, peroxisome | 48.91 | 55.1 |
| PGSC0003DMT400025705 | Potato | plastid | 49.64 | 52.69 |
| TraesCS6A01G277700.1 | Wheat | plastid | 54.71 | 46.18 |
| TraesCS6B01G306100.1 | Wheat | plastid | 54.71 | 45.9 |
| TraesCS6D01G258400.1 | Wheat | plastid | 54.71 | 45.9 |
| Zm00001d051620_P001 | Maize | plastid | 52.54 | 45.74 |
| HORVU6Hr1G070090.1 | Barley | plastid | 54.71 | 45.62 |
| EES05630 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 53.99 | 45.43 |
| Zm00001d017825_P001 | Maize | plastid | 53.26 | 45.37 |
| Os02t0713700-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 54.35 | 44.64 |
| CDX90445 | Canola | plastid | 44.2 | 44.53 |
| GSMUA_Achr9P12320_001 | Banana | plastid | 44.57 | 43.77 |
| KXG19929 | Sorghum | nucleus | 50.0 | 43.4 |
| Zm00001d045928_P001 | Maize | nucleus | 47.83 | 43.14 |
| CDX75499 | Canola | cytosol, nucleus, peroxisome | 47.1 | 43.05 |
| VIT_18s0122g00590.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 48.55 | 42.41 |
| CDX69136 | Canola | cytosol, nucleus, peroxisome | 46.38 | 42.38 |
| CDY54780 | Canola | cytosol | 43.84 | 41.44 |
| HORVU7Hr1G046930.1 | Barley | cytosol, nucleus, peroxisome | 47.1 | 41.14 |
| CDX78802 | Canola | cytosol | 43.12 | 40.89 |
| CDY53650 | Canola | plastid | 38.41 | 40.77 |
| CDX79838 | Canola | plastid | 38.41 | 40.77 |
| TraesCS7B01G193900.1 | Wheat | cytosol, nucleus, peroxisome | 47.1 | 40.37 |
| TraesCS7A01G225700.1 | Wheat | nucleus | 47.1 | 40.25 |
| CDX79599 | Canola | cytosol, peroxisome, plastid | 39.49 | 39.93 |
| CDY23160 | Canola | cytosol, nucleus, vacuole | 40.22 | 39.78 |
| CDY12779 | Canola | cytosol, nucleus, vacuole | 40.58 | 39.72 |
| TraesCS7D01G228800.1 | Wheat | nucleus | 45.65 | 39.62 |
| CDY72485 | Canola | nucleus | 39.13 | 39.56 |
| CDY59041 | Canola | cytosol, nucleus, peroxisome | 40.94 | 39.51 |
| Os06t0326900-01 | Rice | nucleus | 46.01 | 39.44 |
| CDY18931 | Canola | nucleus | 43.84 | 39.16 |
| CDX74739 | Canola | nucleus | 43.84 | 39.03 |
| CDY68242 | Canola | plastid | 41.3 | 38.38 |
| Zm00001d046696_P001 | Maize | cytosol, nucleus, peroxisome | 37.68 | 38.38 |
| CDY41211 | Canola | plastid | 40.94 | 38.31 |
| CDY37040 | Canola | nucleus | 42.39 | 37.99 |
| CDY70947 | Canola | plastid | 35.87 | 37.93 |
| EER88668 | Sorghum | cytosol | 36.96 | 37.78 |
| CDY64701 | Canola | nucleus | 42.39 | 37.62 |
| CDY14862 | Canola | plastid | 35.51 | 37.55 |
| CDY60321 | Canola | plastid | 40.22 | 37.5 |
| CDY27387 | Canola | nucleus | 42.39 | 37.5 |
| CDY49327 | Canola | cytosol, endoplasmic reticulum, nucleus | 42.39 | 37.26 |
| CDY53687 | Canola | nucleus | 40.22 | 37.25 |
| CDY02949 | Canola | plastid | 39.49 | 35.5 |
| CDX84222 | Canola | cytosol | 24.64 | 35.42 |
| CDX98771 | Canola | nucleus | 40.58 | 35.33 |
| CDY45266 | Canola | plastid | 26.09 | 35.12 |
| CDY41289 | Canola | nucleus | 39.86 | 34.92 |
| CDX82978 | Canola | cytosol, nucleus, plastid | 39.86 | 34.92 |
| CDX76085 | Canola | plastid | 38.77 | 34.85 |
| CDY21124 | Canola | cytosol, endoplasmic reticulum, peroxisome | 36.23 | 34.72 |
| CDX94128 | Canola | nucleus | 40.94 | 34.56 |
| CDY30003 | Canola | cytosol, nucleus, peroxisome, plastid | 35.87 | 34.26 |
| TraesCS7B01G297300.1 | Wheat | cytosol | 36.23 | 34.25 |
| TraesCS7A01G395400.1 | Wheat | cytosol | 35.51 | 33.91 |
| CDY21451 | Canola | cytosol | 30.07 | 33.88 |
| CDY31677 | Canola | cytosol | 23.91 | 33.5 |
| CDX83182 | Canola | cytosol | 29.71 | 33.47 |
| CDY04391 | Canola | nucleus | 39.13 | 33.03 |
| HORVU7Hr1G093230.2 | Barley | cytosol | 34.78 | 31.68 |
| CDY65376 | Canola | nucleus | 26.45 | 26.55 |
Protein Annotations
| EnsemblPlants:CDX88286 | EnsemblPlantsGene:GSBRNA2T00147782001 | InterPro:AT-hook_nuclear | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31100 |
| PANTHER:PTHR31100:SF43 | PFAM:PF03479 | PFscan:PS51742 | PIRSF:PIRSF016021 | ProteinID:CDX88286 | ProteinID:CDX88286.1 |
| SEG:seg | SUPFAM:SSF117856 | UniParc:UPI0004EE812B | MapMan:35.1 | : | : |
Description
BnaC06g37300D
Coordinates
chrLK031855:+:162589..163461
Molecular Weight (calculated)
28090.8 Da
IEP (calculated)
7.041
GRAVY (calculated)
-0.461
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGVYDQSGG ASRYFHNLFR PELHHQLQPQ PQPHRHPQLQ PQPQSDDESD SNKDPGPPDS DPVTSGSSQG KRSRGRPPGS KNKPKPPVIV TRDSPNVLRS
101: HVLEISSGAD IVESVNTYAR RRGRGVSVLS GNGVVNGGVG AGAGGVVTLH GRFDILSITG TVLPPPAPPG AGGLSIFVAG AQGHVIGGSV VAPLVASGPV
201: ILMAASFSNA TFERLPLEDE GGEGGGGGGP PPPTSASPPS GAGQGELRGN MSGYDQFPGD PHLLGWGAGA ASRPSF
101: HVLEISSGAD IVESVNTYAR RRGRGVSVLS GNGVVNGGVG AGAGGVVTLH GRFDILSITG TVLPPPAPPG AGGLSIFVAG AQGHVIGGSV VAPLVASGPV
201: ILMAASFSNA TFERLPLEDE GGEGGGGGGP PPPTSASPPS GAGQGELRGN MSGYDQFPGD PHLLGWGAGA ASRPSF
001: MDGGYDQSGG ASRYFHNLFR PELHHQLQPQ PQLHPLPQPQ PQPQPQQQNS DDESDSNKDP GSDPVTSGST GKRPRGRPPG SKNKPKPPVI VTRDSPNVLR
101: SHVLEVSSGA DIVESVTTYA RRRGRGVSIL SGNGTVANVS LRQPATTAAH GANGGTGGVV ALHGRFEILS LTGTVLPPPA PPGSGGLSIF LSGVQGQVIG
201: GNVVAPLVAS GPVILMAASF SNATFERLPL EDEGGEGGEG GEVGEGGGGE GGPPPATSSS PPSGAGQGQL RGNMSGYDQF AGDPHLLGWG AAAAAAPPRP
301: AF
101: SHVLEVSSGA DIVESVTTYA RRRGRGVSIL SGNGTVANVS LRQPATTAAH GANGGTGGVV ALHGRFEILS LTGTVLPPPA PPGSGGLSIF LSGVQGQVIG
201: GNVVAPLVAS GPVILMAASF SNATFERLPL EDEGGEGGEG GEVGEGGGGE GGPPPATSSS PPSGAGQGQL RGNMSGYDQF AGDPHLLGWG AAAAAAPPRP
301: AF
Arabidopsis Description
AHL29AT-hook motif nuclear-localized protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.