Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G306100.1 | Wheat | plastid | 98.78 | 98.78 |
| TraesCS6A01G277700.1 | Wheat | plastid | 97.57 | 98.17 |
| HORVU6Hr1G070090.1 | Barley | plastid | 98.18 | 97.58 |
| EES05630 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 89.97 | 90.24 |
| Zm00001d017825_P001 | Maize | plastid | 87.84 | 89.2 |
| Os02t0713700-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 90.88 | 88.99 |
| GSMUA_Achr9P12320_001 | Banana | plastid | 59.27 | 69.39 |
| TraesCS7D01G228800.1 | Wheat | nucleus | 62.31 | 64.47 |
| Solyc04g082810.2.1 | Tomato | cytosol, nucleus, peroxisome | 45.29 | 60.82 |
| PGSC0003DMT400025705 | Potato | plastid | 47.11 | 59.62 |
| KRH51551 | Soybean | plastid | 35.87 | 57.84 |
| CDX87591 | Canola | nucleus | 48.63 | 57.14 |
| CDY20404 | Canola | nucleus | 46.2 | 56.09 |
| Bra015738.1-P | Field mustard | nucleus | 48.33 | 55.21 |
| CDX96613 | Canola | nucleus | 50.15 | 54.82 |
| CDX88286 | Canola | cytosol, endoplasmic reticulum, nucleus | 45.9 | 54.71 |
| CDY45983 | Canola | nucleus | 47.72 | 54.51 |
| Bra008262.1-P | Field mustard | nucleus | 47.11 | 54.01 |
| CDY31511 | Canola | nucleus | 43.77 | 53.53 |
| AT1G20900.1 | Thale cress | nucleus | 50.15 | 53.05 |
| Bra016444.1-P | Field mustard | nucleus | 50.46 | 52.7 |
| CDY01347 | Canola | nucleus | 43.47 | 52.57 |
| Bra012256.1-P | Field mustard | nucleus | 49.24 | 52.43 |
| AT1G76500.1 | Thale cress | nucleus | 47.42 | 51.66 |
| CDY31858 | Canola | nucleus | 42.86 | 51.65 |
| CDY29494 | Canola | nucleus | 42.86 | 51.46 |
| CDY33658 | Canola | nucleus | 45.59 | 51.37 |
| Bra003717.1-P | Field mustard | nucleus | 44.38 | 50.87 |
| CDX68095 | Canola | cytosol | 41.64 | 50.74 |
| Bra025854.1-P | Field mustard | nucleus | 43.77 | 50.35 |
| CDX85952 | Canola | cytosol | 40.73 | 49.26 |
| TraesCS7D01G294700.1 | Wheat | cytosol, nucleus, peroxisome | 41.34 | 47.89 |
| TraesCS4D01G210500.1 | Wheat | cytosol, nucleus, plastid | 37.08 | 47.66 |
| TraesCS6D01G167600.1 | Wheat | nucleus | 43.77 | 46.6 |
| VIT_18s0122g00590.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 44.68 | 46.52 |
| TraesCS6D01G383400.1 | Wheat | cytosol, extracellular, peroxisome | 40.73 | 46.21 |
| TraesCS6D01G055500.1 | Wheat | cytosol | 39.51 | 46.1 |
| TraesCS4D01G001800.1 | Wheat | nucleus | 39.21 | 45.26 |
| TraesCS2D01G448700.1 | Wheat | cytosol, nucleus, peroxisome | 42.86 | 45.05 |
| TraesCS1D01G043600.1 | Wheat | mitochondrion | 43.16 | 43.83 |
| TraesCS7D01G072200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 42.86 | 40.63 |
| TraesCS3D01G173400.1 | Wheat | plastid | 24.92 | 38.5 |
| TraesCS3D01G496700.1 | Wheat | cytosol | 27.05 | 29.67 |
| TraesCS5D01G252500.1 | Wheat | cytosol | 29.18 | 28.66 |
| TraesCS5D01G199600.1 | Wheat | plastid | 31.31 | 19.77 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G258400.1 | EnsemblPlantsGene:TraesCS6D01G258400 | Gene3D:3.30.1330.80 | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31100 |
| PANTHER:PTHR31100:SF5 | PFAM:PF03479 | PFscan:PS51742 | SEG:seg | SUPFAM:SSF117856 | TIGR:cd11378 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:364226952..364227941
Molecular Weight (calculated)
32057.6 Da
IEP (calculated)
7.145
GRAVY (calculated)
-0.220
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGMDPGGGS PGAGSSRYFH HLLRPQQQQP SPLSPNSHVK MEHSKMSSPD KAPVGEADAG GSGGGAGGDQ PSSSAMVPVD GGSGGGGSGG SGGPTRRPRG
101: RPAGSKNKPK PPIIVTRDSP NALHSHVLEV SAGADIVDCV AEYARRRGRG VCVLSGGGAV VNVALRQPGA SPPGSVVATL RGRFEILSLT GTVLPPPAPP
201: GASGLTVFLS GGQGQVIGGS VVGTLVAAGP VVLMAASFSN AVYERLPLEG EEEEVAAAAA GAEAQDQVAQ SGGPPGQQPA ASQSSGVTGG DAGGMSLYNL
301: AGGNVGNYQL PGDNFGAWGG GGGGVRPPF
101: RPAGSKNKPK PPIIVTRDSP NALHSHVLEV SAGADIVDCV AEYARRRGRG VCVLSGGGAV VNVALRQPGA SPPGSVVATL RGRFEILSLT GTVLPPPAPP
201: GASGLTVFLS GGQGQVIGGS VVGTLVAAGP VVLMAASFSN AVYERLPLEG EEEEVAAAAA GAEAQDQVAQ SGGPPGQQPA ASQSSGVTGG DAGGMSLYNL
301: AGGNVGNYQL PGDNFGAWGG GGGGVRPPF
001: MDGGYDQSGG ASRYFHNLFR PELHHQLQPQ PQLHPLPQPQ PQPQPQQQNS DDESDSNKDP GSDPVTSGST GKRPRGRPPG SKNKPKPPVI VTRDSPNVLR
101: SHVLEVSSGA DIVESVTTYA RRRGRGVSIL SGNGTVANVS LRQPATTAAH GANGGTGGVV ALHGRFEILS LTGTVLPPPA PPGSGGLSIF LSGVQGQVIG
201: GNVVAPLVAS GPVILMAASF SNATFERLPL EDEGGEGGEG GEVGEGGGGE GGPPPATSSS PPSGAGQGQL RGNMSGYDQF AGDPHLLGWG AAAAAAPPRP
301: AF
101: SHVLEVSSGA DIVESVTTYA RRRGRGVSIL SGNGTVANVS LRQPATTAAH GANGGTGGVV ALHGRFEILS LTGTVLPPPA PPGSGGLSIF LSGVQGQVIG
201: GNVVAPLVAS GPVILMAASF SNATFERLPL EDEGGEGGEG GEVGEGGGGE GGPPPATSSS PPSGAGQGQL RGNMSGYDQF AGDPHLLGWG AAAAAAPPRP
301: AF
Arabidopsis Description
AHL29AT-hook motif nuclear-localized protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.