Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G243200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 97.31 | 97.02 |
| TraesCS5A01G245800.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 97.91 | 96.47 |
| Os09t0464300-00 | Rice | nucleus | 77.61 | 77.84 |
| Zm00001d005923_P001 | Maize | nucleus | 70.75 | 68.9 |
| Zm00001d020768_P001 | Maize | cytosol | 67.76 | 68.17 |
| OQU89633 | Sorghum | cytosol | 70.45 | 66.67 |
| GSMUA_Achr7P19000_001 | Banana | cytosol, plasma membrane, plastid | 35.22 | 63.44 |
| GSMUA_Achr8P23410_001 | Banana | cytosol | 35.82 | 58.54 |
| GSMUA_Achr10P... | Banana | nucleus | 47.76 | 57.35 |
| GSMUA_AchrUn_... | Banana | nucleus | 51.34 | 51.34 |
| GSMUA_Achr3P06770_001 | Banana | cytosol | 34.33 | 50.66 |
| KRH62181 | Soybean | nucleus | 39.4 | 47.14 |
| VIT_18s0001g07380.t01 | Wine grape | nucleus | 33.73 | 46.12 |
| KRH52892 | Soybean | nucleus | 38.81 | 45.77 |
| KRH72453 | Soybean | nucleus | 36.42 | 45.02 |
| PGSC0003DMT400024250 | Potato | cytosol, plastid | 36.12 | 44.98 |
| KRH16838 | Soybean | nucleus | 33.73 | 44.14 |
| CDY21451 | Canola | cytosol | 32.24 | 44.08 |
| CDX83182 | Canola | cytosol | 32.24 | 44.08 |
| Bra000593.1-P | Field mustard | cytosol | 34.33 | 43.73 |
| CDY45266 | Canola | plastid | 25.67 | 41.95 |
| Bra026211.1-P | Field mustard | plastid | 25.67 | 41.95 |
| AT5G49700.1 | Thale cress | nucleus | 34.33 | 41.67 |
| AT1G14490.2 | Thale cress | plastid | 27.16 | 40.44 |
| TraesCS4D01G210500.1 | Wheat | cytosol, nucleus, plastid | 30.75 | 40.23 |
| Solyc04g076220.2.1 | Tomato | nucleus | 39.1 | 38.99 |
| PGSC0003DMT400005182 | Potato | nucleus | 30.45 | 38.06 |
| Solyc12g087950.1.1 | Tomato | nucleus | 29.85 | 37.59 |
| TraesCS6D01G055500.1 | Wheat | cytosol | 31.34 | 37.23 |
| TraesCS3D01G173400.1 | Wheat | plastid | 22.99 | 36.15 |
| TraesCS7D01G294700.1 | Wheat | cytosol, nucleus, peroxisome | 29.85 | 35.21 |
| TraesCS4D01G001800.1 | Wheat | nucleus | 29.85 | 35.09 |
| CDY65376 | Canola | nucleus | 28.36 | 34.55 |
| TraesCS6D01G383400.1 | Wheat | cytosol, extracellular, peroxisome | 29.25 | 33.79 |
| TraesCS2D01G448700.1 | Wheat | cytosol, nucleus, peroxisome | 30.15 | 32.27 |
| TraesCS1D01G043600.1 | Wheat | mitochondrion | 31.04 | 32.1 |
| TraesCS6D01G167600.1 | Wheat | nucleus | 28.36 | 30.74 |
| TraesCS6D01G258400.1 | Wheat | plastid | 28.66 | 29.18 |
| TraesCS7D01G228800.1 | Wheat | nucleus | 27.46 | 28.93 |
| TraesCS3D01G496700.1 | Wheat | cytosol | 25.67 | 28.67 |
| TraesCS7D01G072200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 28.66 | 27.67 |
| TraesCS5D01G199600.1 | Wheat | plastid | 27.16 | 17.47 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G252500.1 | EnsemblPlantsGene:TraesCS5D01G252500 | Gene3D:3.30.1330.80 | InterPro:AT-hook_nuclear | InterPro:IPR005175 | InterPro:PPC_dom |
| PANTHER:PTHR31100 | PANTHER:PTHR31100:SF41 | PFAM:PF03479 | PFscan:PS51742 | PIRSF:PIRSF016021 | SEG:seg |
| SUPFAM:SSF117856 | TIGR:cd11378 | TMHMM:TMhelix | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr5D:-:358222538..358223545
Molecular Weight (calculated)
35009.8 Da
IEP (calculated)
8.401
GRAVY (calculated)
-0.303
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFGKADMSK EGMYQERKDV PATRFATPPP MRHRHAGHGD QQQQLECFSD EVDSRCTAEM KEPGGSAAGS QLVSGGGVGD GSSIEVAKKR RGRPPGSKNK
101: PKPPVVITRE AEPAAAMRPH VIEIPGGRDV AEALARFASR RNLGICVLAG TGAVGNVSLR HPCPTAPGAA PAVVVFQGRF EILSISATFL PPAMAAVAPQ
201: AAAVAAGLSI SLAGPHGQIV GGAVVGPLYA ATTIVVVAAA FTNPTFHRLP ADDDAPMPVS VSLSGSGDAD EHRARQHQPE PQEQRHQRRH VTPSAAQPVE
301: PCGVPVYACH PQPQEVMWPL AARAPHQPPP PPPPY
101: PKPPVVITRE AEPAAAMRPH VIEIPGGRDV AEALARFASR RNLGICVLAG TGAVGNVSLR HPCPTAPGAA PAVVVFQGRF EILSISATFL PPAMAAVAPQ
201: AAAVAAGLSI SLAGPHGQIV GGAVVGPLYA ATTIVVVAAA FTNPTFHRLP ADDDAPMPVS VSLSGSGDAD EHRARQHQPE PQEQRHQRRH VTPSAAQPVE
301: PCGVPVYACH PQPQEVMWPL AARAPHQPPP PPPPY
001: MKGEYREQKS NEMFSKLPHH QQQQQQQQQQ HSLTSHFHLS STVTPTVDDS SIEVVRRPRG RPPGSKNKPK PPVFVTRDTD PPMSPYILEV PSGNDVVEAI
101: NRFCRRKSIG VCVLSGSGSV ANVTLRQPSP AALGSTITFH GKFDLLSVSA TFLPPPPRTS LSPPVSNFFT VSLAGPQGQI IGGFVAGPLI SAGTVYVIAA
201: SFNNPSYHRL PAEEEQKHSA GTGEREGQSP PVSGGGEESG QMAGSGGESC GVSMYSCHMG GSDVIWAPTA RAPPPY
101: NRFCRRKSIG VCVLSGSGSV ANVTLRQPSP AALGSTITFH GKFDLLSVSA TFLPPPPRTS LSPPVSNFFT VSLAGPQGQI IGGFVAGPLI SAGTVYVIAA
201: SFNNPSYHRL PAEEEQKHSA GTGEREGQSP PVSGGGEESG QMAGSGGESC GVSMYSCHMG GSDVIWAPTA RAPPPY
Arabidopsis Description
AHL17AT-hook motif nuclear-localized protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.