Factsheet for Bra000593.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83182	Canola	cytosol	92.78	99.59
CDY21451	Canola	cytosol	91.64	98.37
AT5G49700.1	Thale cress	nucleus	87.83	83.7
Bra026211.1-P	Field mustard	plastid	57.41	73.66
KRH62181	Soybean	nucleus	65.4	61.43
KRH52892	Soybean	nucleus	65.4	60.56
KRH72453	Soybean	nucleus	56.65	54.98
PGSC0003DMT400024250	Potato	cytosol, plastid	54.75	53.53
GSMUA_Achr7P19000_001	Banana	cytosol, plasma membrane, plastid	37.64	53.23
KRH16838	Soybean	nucleus	49.43	50.78
VIT_18s0001g07380.t01	Wine grape	nucleus	46.77	50.2
Solyc12g087950.1.1	Tomato	nucleus	47.91	47.37
PGSC0003DMT400005182	Potato	nucleus	47.53	46.64
Solyc04g076220.2.1	Tomato	nucleus	58.94	46.13
GSMUA_Achr8P23410_001	Banana	cytosol	34.98	44.88
GSMUA_Achr10P...	Banana	nucleus	47.53	44.8
GSMUA_Achr3P06770_001	Banana	cytosol	34.98	40.53
Os09t0464300-00	Rice	nucleus	45.25	35.63
TraesCS5D01G252500.1	Wheat	cytosol	43.73	34.33
Bra017324.1-P	Field mustard	cytosol, nucleus, peroxisome	37.26	34.27
TraesCS5B01G243200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	43.73	34.23
Zm00001d020768_P001	Maize	cytosol	42.97	33.93
Bra003217.1-P	Field mustard	nucleus	38.4	33.89
Zm00001d005923_P001	Maize	nucleus	44.11	33.72
TraesCS5A01G245800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	43.35	33.53
Bra007176.1-P	Field mustard	plastid	37.64	33.33
GSMUA_AchrUn_...	Banana	nucleus	42.21	33.13
Bra005355.1-P	Field mustard	cytosol	35.74	33.1
Bra040183.1-P	Field mustard	cytosol	36.12	32.42
Bra008262.1-P	Field mustard	nucleus	34.98	32.06
Bra014735.1-P	Field mustard	plastid	37.26	31.92
Bra012639.1-P	Field mustard	cytosol	34.98	31.62
OQU89633	Sorghum	cytosol	41.83	31.07
Bra040184.1-P	Field mustard	cytosol, nucleus, peroxisome	36.88	30.89
Bra011612.1-P	Field mustard	cytosol, nucleus, peroxisome	35.36	30.79
Bra015738.1-P	Field mustard	nucleus	33.46	30.56
KXG25333	Sorghum	cytosol	38.4	30.33
Zm00001d031826_P001	Maize	cytosol, endoplasmic reticulum, nucleus	33.84	30.27
Bra016853.1-P	Field mustard	plastid	30.04	30.27
Bra004732.1-P	Field mustard	plastid	30.04	30.27
Bra000281.1-P	Field mustard	plastid	30.04	30.27
Os08t0478466-01	Rice	nucleus	37.26	30.25
Bra003717.1-P	Field mustard	nucleus	32.7	29.97
Bra004911.1-P	Field mustard	nucleus	34.98	29.87
Bra039338.1-P	Field mustard	nucleus	33.84	28.9
Bra040135.1-P	Field mustard	cytosol, nucleus, peroxisome	31.94	28.47
Bra012256.1-P	Field mustard	nucleus	33.08	28.16
Bra023007.1-P	Field mustard	cytosol, nucleus, peroxisome	36.12	28.02
Bra016444.1-P	Field mustard	nucleus	33.46	27.94
Bra013649.1-P	Field mustard	nucleus	34.6	27.91
Bra025854.1-P	Field mustard	nucleus	29.66	27.27
Bra019355.1-P	Field mustard	nucleus	33.84	27.22

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	EnsemblPlantsGene:Bra000593	EnsemblPlants:Bra000593.1	EnsemblPlants:Bra000593.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175
UniProt:M4C8R5	PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100
PANTHER:PTHR31100:SF1	SUPFAM:SSF117856	UniParc:UPI000254018A	SEG:seg	:	:

Description

AT5G49700 (E=2e-100) | DNA-binding protein-related

Coordinates

chrA03:+:11953202..11953993

Molecular Weight (calculated)

27839.0 Da

IEP (calculated)

8.348

GRAVY (calculated)

-0.288

Length

263 amino acids

Sequence
(BLAST)

001: MKGEGNEMFP KLPQNHSLSS HFHLPATIAV DDSSIEVVRR PRGRPPGSKN KPKPQVYVTR DTEPPMSPYI LEVPSGNDVV EAINRFCRRK SIGVCVLSGS
101: GSVANITLRQ PSPAAPGSTI TFHGKFDLLS VSATFLPPPP RTSLSPPVAN FFTVSLAGPQ GQIIGGFVAG PLISAGTVYV IAASFNNPSY HRLPAEEEHR
201: HSVSARAGEG DGQSPPVSRG GGESEHVAVR GEESCGVSMY SCHMGTHGSD VIWAPTARAP PPY

Best Arabidopsis Sequence Match ( AT5G49700.1 )
(BLAST)

001: MKGEYREQKS NEMFSKLPHH QQQQQQQQQQ HSLTSHFHLS STVTPTVDDS SIEVVRRPRG RPPGSKNKPK PPVFVTRDTD PPMSPYILEV PSGNDVVEAI
101: NRFCRRKSIG VCVLSGSGSV ANVTLRQPSP AALGSTITFH GKFDLLSVSA TFLPPPPRTS LSPPVSNFFT VSLAGPQGQI IGGFVAGPLI SAGTVYVIAA
201: SFNNPSYHRL PAEEEQKHSA GTGEREGQSP PVSGGGEESG QMAGSGGESC GVSMYSCHMG GSDVIWAPTA RAPPPY

Arabidopsis Description

AHL17AT-hook motif nuclear-localized protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.