Factsheet for Bra012639.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90445	Canola	plastid	93.81	99.64
AT4G17800.1	Thale cress	cytosol	94.5	94.18
Bra040183.1-P	Field mustard	cytosol	92.78	92.15
VIT_02s0012g00880.t01	Wine grape	cytosol	70.45	72.69
KRH58197	Soybean	cytosol	64.6	68.12
PGSC0003DMT400002959	Potato	nucleus	61.51	67.55
KRH04340	Soybean	cytosol	57.04	66.14
Solyc08g077010.1.1	Tomato	cytosol	64.26	64.93
PGSC0003DMT400045203	Potato	nucleus	63.57	63.79
Bra017324.1-P	Field mustard	cytosol, nucleus, peroxisome	62.54	63.64
Bra005355.1-P	Field mustard	cytosol	60.82	62.32
GSMUA_Achr5P03390_001	Banana	nucleus	52.23	58.69
GSMUA_Achr2P04780_001	Banana	cytosol, nucleus, plastid	50.86	58.04
Bra023007.1-P	Field mustard	cytosol, nucleus, peroxisome	62.2	53.39
GSMUA_Achr5P13920_001	Banana	nucleus	40.55	51.98
Bra039338.1-P	Field mustard	nucleus	51.2	48.38
Bra004911.1-P	Field mustard	nucleus	48.45	45.78
Bra019355.1-P	Field mustard	nucleus	50.17	44.65
Bra015738.1-P	Field mustard	nucleus	43.3	43.75
Bra003717.1-P	Field mustard	nucleus	42.61	43.21
Bra013649.1-P	Field mustard	nucleus	47.77	42.64
Bra008262.1-P	Field mustard	nucleus	41.92	42.51
Bra000281.1-P	Field mustard	plastid	37.46	41.76
Bra011612.1-P	Field mustard	cytosol, nucleus, peroxisome	42.96	41.39
Bra040184.1-P	Field mustard	cytosol, nucleus, peroxisome	43.99	40.76
Bra004732.1-P	Field mustard	plastid	36.08	40.23
Bra040135.1-P	Field mustard	cytosol, nucleus, peroxisome	40.21	39.66
Bra016853.1-P	Field mustard	plastid	35.4	39.46
Bra016444.1-P	Field mustard	nucleus	42.61	39.37
Bra003217.1-P	Field mustard	nucleus	40.21	39.26
Bra026211.1-P	Field mustard	plastid	27.49	39.02
Bra007176.1-P	Field mustard	plastid	39.52	38.72
Bra012256.1-P	Field mustard	nucleus	40.89	38.51
Bra014735.1-P	Field mustard	plastid	39.52	37.46
Bra025854.1-P	Field mustard	nucleus	36.43	37.06
Bra000593.1-P	Field mustard	cytosol	31.62	34.98

Protein Annotations

EnsemblPlants:Bra012639.1	EnsemblPlants:Bra012639.1-P	EnsemblPlantsGene:Bra012639	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom
PANTHER:PTHR31100	PANTHER:PTHR31100:SF14	PFAM:PF03479	PFscan:PS51742	SEG:seg	SUPFAM:SSF117856
UniParc:UPI00025409B3	UniProt:M4D829	MapMan:35.1	:	:	:

Description

AT4G17800 (E=5e-118) | DNA-binding protein-related

Coordinates

chrA03:-:22995952..22996827

Molecular Weight (calculated)

29517.7 Da

IEP (calculated)

6.675

GRAVY (calculated)

-0.223

Length

291 amino acids

Sequence
(BLAST)

001: MAGLDLGTSF RYVNHQLHRP DLHLHHNSSS DDVTPGVGIG HFTADDEDNN HQGLDLASGG GGSGSSGGGH GGGGGDGVGR RPRGRPPGSK NKPKPPVIIT
101: RESANTLRAH ILEVTNGCDV FDCVATYARR RQRRICVLSG SGTVTNVSIR QPSAAGAVVT LQGTFEILSL SGSFLPPPAP PGATSLTIFV AGGQGQVIGG
201: SVVGELTAAG PVIVIAASFT NVAYERLPLE EDEQQHLGGG GGANGGGNLF PEVAGGGGGG LPFFNLPMNM QPNVQLPVEG WPGNSGGRGP F

Best Arabidopsis Sequence Match ( AT4G17800.1 )
(BLAST)

001: MAGLDLGTAF RYVNHQLHRP DLHLHHNSSS DDVTPGAGMG HFTVDDEDNN NNHQGLDLAS GGGSGSSGGG GGHGGGGDVV GRRPRGRPPG SKNKPKPPVI
101: ITRESANTLR AHILEVTNGC DVFDCVATYA RRRQRGICVL SGSGTVTNVS IRQPSAAGAV VTLQGTFEIL SLSGSFLPPP APPGATSLTI FLAGGQGQVV
201: GGSVVGELTA AGPVIVIAAS FTNVAYERLP LEEDEQQQQL GGGSNGGGNL FPEVAAGGGG GLPFFNLPMN MQPNVQLPVE GWPGNSGGRG PF

Arabidopsis Description

AHL23AT-hook motif nuclear-localized protein 23 [Source:UniProtKB/Swiss-Prot;Acc:O23620]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.