Factsheet for Bra013649.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41289	Canola	nucleus	95.4	98.73
CDX82978	Canola	cytosol, nucleus, plastid	94.79	98.1
Bra019355.1-P	Field mustard	nucleus	92.33	92.05
AT4G22810.1	Thale cress	nucleus	88.04	88.58
Bra039338.1-P	Field mustard	nucleus	53.99	57.14
Bra004911.1-P	Field mustard	nucleus	52.15	55.19
Bra012639.1-P	Field mustard	cytosol	42.64	47.77
Os06t0136900-01	Rice	nucleus	47.85	47.56
Bra017324.1-P	Field mustard	cytosol, nucleus, peroxisome	41.72	47.55
Bra040183.1-P	Field mustard	cytosol	42.64	47.44
Bra005355.1-P	Field mustard	cytosol	40.8	46.83
HORVU7Hr1G017700.2	Barley	nucleus	48.47	45.27
Bra000281.1-P	Field mustard	plastid	35.89	44.83
Bra004732.1-P	Field mustard	plastid	35.58	44.44
TraesCS7D01G072200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	46.63	43.8
Zm00001d036088_P001	Maize	extracellular	37.12	43.21
Zm00001d045427_P001	Maize	cytosol, nucleus, plasma membrane	45.09	43.11
TraesCS7A01G076500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	45.71	43.06
TraesCS4A01G374700.1	Wheat	nucleus	45.71	42.33
Bra040184.1-P	Field mustard	cytosol, nucleus, peroxisome	40.49	42.04
EER89149	Sorghum	cytosol, nucleus, plastid	44.79	41.83
Bra016853.1-P	Field mustard	plastid	33.13	41.38
Bra011612.1-P	Field mustard	cytosol, nucleus, peroxisome	37.42	40.4
Bra023007.1-P	Field mustard	cytosol, nucleus, peroxisome	41.72	40.12
Bra040135.1-P	Field mustard	cytosol, nucleus, peroxisome	35.89	39.66
Bra008262.1-P	Field mustard	nucleus	34.66	39.37
Bra015738.1-P	Field mustard	nucleus	34.66	39.24
Bra026211.1-P	Field mustard	plastid	24.54	39.02
Bra012256.1-P	Field mustard	nucleus	36.81	38.84
Bra007176.1-P	Field mustard	plastid	35.28	38.72
Bra003217.1-P	Field mustard	nucleus	34.66	37.92
Bra016444.1-P	Field mustard	nucleus	36.5	37.78
Bra003717.1-P	Field mustard	nucleus	33.13	37.63
Bra014735.1-P	Field mustard	plastid	35.28	37.46
Bra025854.1-P	Field mustard	nucleus	31.9	36.36
Bra000593.1-P	Field mustard	cytosol	27.91	34.6

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	EnsemblPlantsGene:Bra013649	EnsemblPlants:Bra013649.1	EnsemblPlants:Bra013649.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR005175	UniProt:M4DAY9	PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742
PANTHER:PTHR31100	PANTHER:PTHR31100:SF15	SUPFAM:SSF117856	UniParc:UPI00025458F6	SEG:seg	:

Description

AT4G22810 (E=2e-111) | DNA-binding protein-related

Coordinates

chrA01:+:6862586..6863566

Molecular Weight (calculated)

34622.7 Da

IEP (calculated)

6.889

GRAVY (calculated)

-0.729

Length

326 amino acids

Sequence
(BLAST)

001: MDPVQSHGSQ SSLPPTFHSR DFQLHLQQQQ QQQEFFLHHH QQQRNQPDQD DHQGGGRLNR QIKMDREETS DNMDNMANNS GSEGKDMNLG EGGSGGGSGG
101: DQMTRRPRGR PAGSKNKPKP PIIITRDSAN ALRTHVMEIG DGCDLVESVA TFARRRQRGV CVMSGTGNVM NVTIRQPGSP SPGSVVSLHG RFEILSLSGS
201: FLPPPAPPNA TGLSVYLAGG QGQVVGGSGG GPLLCAGPVV VMAASFSNAA YERLPLEEDE MQTPVHGGGG GGGSMEPPPM MGGPMPHQQQ AMSAHQGLPP
301: NLLGPTHQGL PQHDNQSYWS TGRPPY

Best Arabidopsis Sequence Match ( AT4G22810.1 )
(BLAST)

001: MDPVQSHGSQ SSLPPPFHAR DFQLHLQQQQ QEFFLHHHQQ QRNQTDGDQQ GGSGGNRQIK MDREETSDNI DNIANNSGSE GKDIDIHGGS GEGGGGSGGD
101: HQMTRRPRGR PAGSKNKPKP PIIITRDSAN ALRTHVMEIG DGCDLVESVA TFARRRQRGV CVMSGTGNVT NVTIRQPGSH PSPGSVVSLH GRFEILSLSG
201: SFLPPPAPPT ATGLSVYLAG GQGQVVGGSV VGPLLCAGPV VVMAASFSNA AYERLPLEED EMQTPVHGGG GGGSLESPPM MGQQLQHQQQ AMSGHQGLPP
301: NLLGSVQLQQ QHDQSYWSTG RPPY

Arabidopsis Description

AHL24AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178V625]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.