Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d013757_P010 | |
| Zm00001d033159_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G12050.1 | Zm00001d013757_P010 | AT4G26630.1 | 25387881 |
| AT4G12050.1 | Zm00001d033159_P001 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d045427_P001 | Maize | cytosol, nucleus, plasma membrane | 65.71 | 53.96 |
| EER89149 | Sorghum | cytosol, nucleus, plastid | 64.29 | 51.58 |
| Os06t0136900-01 | Rice | nucleus | 52.5 | 44.82 |
| Zm00001d031887_P001 | Maize | nucleus | 42.5 | 44.24 |
| Zm00001d039249_P001 | Maize | cytosol | 24.29 | 43.87 |
| Zm00001d018508_P001 | Maize | cytosol | 37.86 | 43.27 |
| Zm00001d049906_P001 | Maize | nucleus | 40.36 | 42.64 |
| TraesCS7A01G076500.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 52.5 | 42.49 |
| Zm00001d049521_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome | 45.36 | 42.47 |
| Zm00001d024537_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 43.93 | 42.27 |
| HORVU7Hr1G017700.2 | Barley | nucleus | 52.5 | 42.12 |
| TraesCS7D01G072200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 52.14 | 42.07 |
| TraesCS4A01G374700.1 | Wheat | nucleus | 52.5 | 41.76 |
| Zm00001d002495_P001 | Maize | cytosol, nucleus, peroxisome | 44.29 | 40.13 |
| Zm00001d026035_P001 | Maize | cytosol, nucleus, peroxisome | 44.29 | 40.0 |
| Zm00001d016132_P001 | Maize | nucleus | 43.93 | 39.81 |
| CDX82978 | Canola | cytosol, nucleus, plastid | 43.57 | 38.73 |
| CDX98771 | Canola | nucleus | 43.57 | 38.49 |
| Zm00001d051620_P001 | Maize | plastid | 43.57 | 38.49 |
| CDY41289 | Canola | nucleus | 43.21 | 38.41 |
| AT4G12050.1 | Thale cress | cytosol, nucleus, plastid | 46.43 | 38.35 |
| AT4G22810.1 | Thale cress | nucleus | 44.29 | 38.27 |
| Zm00001d053429_P001 | Maize | nucleus | 43.57 | 38.12 |
| CDY04391 | Canola | nucleus | 44.29 | 37.92 |
| CDX94128 | Canola | nucleus | 43.57 | 37.31 |
| Bra019355.1-P | Field mustard | nucleus | 43.57 | 37.31 |
| Bra013649.1-P | Field mustard | nucleus | 43.21 | 37.12 |
| Zm00001d017825_P001 | Maize | plastid | 42.5 | 36.73 |
| Zm00001d028577_P001 | Maize | nucleus | 35.36 | 36.26 |
| Zm00001d009031_P001 | Maize | mitochondrion, plastid | 26.07 | 35.96 |
| Zm00001d046696_P001 | Maize | cytosol, nucleus, peroxisome | 34.64 | 35.79 |
| Zm00001d042060_P001 | Maize | plastid | 31.07 | 35.51 |
| Zm00001d045928_P001 | Maize | nucleus | 37.14 | 33.99 |
| Zm00001d031826_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 30.36 | 28.91 |
| Zm00001d020768_P001 | Maize | cytosol | 30.36 | 25.53 |
| Zm00001d005923_P001 | Maize | nucleus | 30.36 | 24.71 |
Protein Annotations
| EnsemblPlants:Zm00001d036088_P001 | EnsemblPlants:Zm00001d036088_T001 | EnsemblPlantsGene:Zm00001d036088 | Gene3D:3.30.1330.80 | InterPro:IPR005175 | InterPro:PPC_dom |
| PANTHER:PTHR31100 | PANTHER:PTHR31100:SF2 | PFAM:PF03479 | PFscan:PS51742 | ProteinID:AQK80270.1 | SEG:seg |
| SignalP:SignalP-noTM | SUPFAM:SSF117856 | UniParc:UPI00084536A3 | UniProt:A0A1D6LKN7 | MapMan:35.1 | : |
Description
AT-hook motif nuclear-localized protein 16
Coordinates
chr6:-:71478438..71513016
Molecular Weight (calculated)
28743.7 Da
IEP (calculated)
9.053
GRAVY (calculated)
0.022
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVLVAVTLL SVDASRFYAD GMETRHPRYL YPEKKRSDNY ATATSRGGRR LAPVPGAGGP PPAGPPRGVQ PSKNKPKPPV IITRDSASAL RAHVLEVAAG
101: CDVVGSVAAF ARRRQVGVCV LSGAGSVANV RIRNQPGAVV TTTLAGRFEV LSLCGSFLPP LAATGLTVYL SAGQGQVVGG AVAGPLVASG PVVIVAACFG
201: NAAFDRLPLE DDEPLPQPQQ NQHLQPHPQQ GPGCVLPGAA GGLQPSSPPL PLPGQHPLAD QLPHTLMNGL PLPADAYGWC
101: CDVVGSVAAF ARRRQVGVCV LSGAGSVANV RIRNQPGAVV TTTLAGRFEV LSLCGSFLPP LAATGLTVYL SAGQGQVVGG AVAGPLVASG PVVIVAACFG
201: NAAFDRLPLE DDEPLPQPQQ NQHLQPHPQQ GPGCVLPGAA GGLQPSSPPL PLPGQHPLAD QLPHTLMNGL PLPADAYGWC
001: MDQVSRSLPP PFLSRDLHLH PHHQFQHQQQ QQQQNHGHDI DQHRIGGLKR DRDADIDPNE HSSAGKDQST PGSGGESGGG GGGDNHITRR PRGRPAGSKN
101: KPKPPIIITR DSANALKSHV MEVANGCDVM ESVTVFARRR QRGICVLSGN GAVTNVTIRQ PASVPGGGSS VVNLHGRFEI LSLSGSFLPP PAPPAASGLT
201: IYLAGGQGQV VGGSVVGPLM ASGPVVIMAA SFGNAAYERL PLEEDDQEEQ TAGAVANNID GNATMGGGTQ TQTQTQQQQQ QQLMQDPTSF IQGLPPNLMN
301: SVQLPAEAYW GTPRPSF
101: KPKPPIIITR DSANALKSHV MEVANGCDVM ESVTVFARRR QRGICVLSGN GAVTNVTIRQ PASVPGGGSS VVNLHGRFEI LSLSGSFLPP PAPPAASGLT
201: IYLAGGQGQV VGGSVVGPLM ASGPVVIMAA SFGNAAYERL PLEEDDQEEQ TAGAVANNID GNATMGGGTQ TQTQTQQQQQ QQLMQDPTSF IQGLPPNLMN
301: SVQLPAEAYW GTPRPSF
Arabidopsis Description
AHL22AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VXD2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.