Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Zm00001d005726_P001 | |
Zm00001d020409_P002 | |
Zm00001d032009_P001 | |
Zm00001d050365_P006 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KXG25365 | Sorghum | nucleus | 91.45 | 91.11 |
Zm00001d049906_P001 | Maize | nucleus | 89.22 | 90.57 |
Os08t0563200-01 | Rice | cytosol | 70.26 | 80.43 |
TraesCS4B01G001100.1 | Wheat | cytosol, nucleus, peroxisome | 71.75 | 77.2 |
GSMUA_AchrUn_... | Banana | cytosol | 46.84 | 75.45 |
HORVU6Hr1G010470.2 | Barley | cytosol, nucleus, peroxisome | 72.49 | 69.39 |
Zm00001d018508_P001 | Maize | cytosol | 63.2 | 69.39 |
GSMUA_Achr2P04080_001 | Banana | cytosol | 60.59 | 69.36 |
GSMUA_Achr11P... | Banana | cytosol | 44.24 | 69.19 |
TraesCS4A01G312400.1 | Wheat | nucleus | 73.23 | 69.12 |
HORVU4Hr1G000870.2 | Barley | nucleus | 73.61 | 68.99 |
TraesCS6A01G053800.1 | Wheat | nucleus | 71.75 | 68.44 |
TraesCS6B01G072300.1 | Wheat | nucleus | 71.75 | 68.44 |
TraesCS4D01G001800.1 | Wheat | nucleus | 72.12 | 68.07 |
TraesCS6D01G055500.1 | Wheat | cytosol | 71.0 | 67.73 |
Os07t0235200-01 | Rice | endoplasmic reticulum, extracellular | 44.61 | 63.49 |
VIT_05s0049g00100.t01 | Wine grape | cytosol | 61.34 | 63.46 |
KRG90376 | Soybean | nucleus | 62.08 | 62.31 |
KRH31728 | Soybean | cytosol | 62.45 | 62.22 |
GSMUA_Achr5P19550_001 | Banana | cytosol | 61.34 | 61.11 |
KRH34516 | Soybean | cytosol, nucleus, peroxisome | 63.2 | 58.62 |
Solyc09g089620.1.1 | Tomato | nucleus | 61.71 | 58.04 |
PGSC0003DMT400044451 | Potato | nucleus | 60.97 | 57.54 |
AT4G14465.1 | Thale cress | cytosol, nucleus, plastid | 59.11 | 56.58 |
CDY23160 | Canola | cytosol, nucleus, vacuole | 58.36 | 56.27 |
CDY12779 | Canola | cytosol, nucleus, vacuole | 58.36 | 55.67 |
KRG92293 | Soybean | cytosol, mitochondrion, nucleus | 62.45 | 55.45 |
Zm00001d028577_P001 | Maize | nucleus | 51.3 | 50.55 |
Zm00001d016132_P001 | Maize | nucleus | 52.04 | 45.31 |
Zm00001d039249_P001 | Maize | cytosol | 26.02 | 45.16 |
Zm00001d024537_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 48.33 | 44.67 |
HORVU0Hr1G011700.1 | Barley | cytosol | 35.69 | 44.44 |
Zm00001d053429_P001 | Maize | nucleus | 52.79 | 44.38 |
Zm00001d051620_P001 | Maize | plastid | 51.3 | 43.53 |
Zm00001d046696_P001 | Maize | cytosol, nucleus, peroxisome | 43.49 | 43.17 |
Zm00001d049521_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome | 47.58 | 42.81 |
Zm00001d036088_P001 | Maize | extracellular | 44.24 | 42.5 |
Zm00001d002495_P001 | Maize | cytosol, nucleus, peroxisome | 48.7 | 42.39 |
Zm00001d026035_P001 | Maize | cytosol, nucleus, peroxisome | 48.7 | 42.26 |
Zm00001d017825_P001 | Maize | plastid | 50.19 | 41.67 |
Zm00001d009031_P001 | Maize | mitochondrion, plastid | 30.86 | 40.89 |
Zm00001d045928_P001 | Maize | nucleus | 43.87 | 38.56 |
Zm00001d045427_P001 | Maize | cytosol, nucleus, plasma membrane | 48.7 | 38.42 |
Zm00001d042060_P001 | Maize | plastid | 31.6 | 34.69 |
Zm00001d031826_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 36.43 | 33.33 |
Zm00001d020768_P001 | Maize | cytosol | 37.17 | 30.03 |
Zm00001d005923_P001 | Maize | nucleus | 37.55 | 29.36 |
Protein Annotations
Gene3D:3.30.1330.80 | MapMan:35.1 | UniProt:A0A096RF31 | InterPro:AT-hook_nuclear | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003677 | GO:GO:0003680 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005175 | ProteinID:ONM03878.1 | PFAM:PF03479 |
PIRSF:PIRSF016021 | InterPro:PPC_dom | PFscan:PS51742 | PANTHER:PTHR31100 | PANTHER:PTHR31100:SF3 | SUPFAM:SSF117856 |
UniParc:UPI0001950F4B | EnsemblPlantsGene:Zm00001d031887 | EnsemblPlants:Zm00001d031887_P001 | EnsemblPlants:Zm00001d031887_T001 | SEG:seg | : |
Description
AT-hook motif nuclear-localized protein 20
Coordinates
chr1:+:205332444..205333253
Molecular Weight (calculated)
26804.8 Da
IEP (calculated)
7.679
GRAVY (calculated)
-0.191
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPSSKDGAT ATEQPTSGDD DRENGGTGEP KEGAVVAGNR RPRGRPPGSK NKPKPPIFVT RDSPNALRSH VMEVAGGADV AESIAHFARR RQRGVCVLSG
101: AGTVADVALR QPAAPGAVVA LRGRFEILSL TGTFLPGPAP PGSTGLTVYL AGGQGQVVGG SVVGTLTAAG PVMVMASTFA NATYERLPLD DADEEPAGQQ
201: AAQLPPGPGG GQPMVMGGMA DPSAVPMFGG AGGVPPSLMP AGAAAASSGA GLQLGHDRLA WAHARPPPY
101: AGTVADVALR QPAAPGAVVA LRGRFEILSL TGTFLPGPAP PGSTGLTVYL AGGQGQVVGG SVVGTLTAAG PVMVMASTFA NATYERLPLD DADEEPAGQQ
201: AAQLPPGPGG GQPMVMGGMA DPSAVPMFGG AGGVPPSLMP AGAAAASSGA GLQLGHDRLA WAHARPPPY
001: MANPWWTNQS GLAGMVDHSV SSGHHQNHHH QSLLTKGDLG IAMNQSQDND QDEEDDPREG AVEVVNRRPR GRPPGSKNKP KAPIFVTRDS PNALRSHVLE
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y
Arabidopsis Description
AHL20AT-hook motif nuclear-localized protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWQ2]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.