Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G312400.1 | Wheat | nucleus | 98.4 | 86.32 |
| TraesCS4D01G001800.1 | Wheat | nucleus | 97.6 | 85.61 |
| HORVU4Hr1G000870.2 | Barley | nucleus | 96.4 | 83.97 |
| TraesCS6B01G072300.1 | Wheat | nucleus | 93.2 | 82.62 |
| Os08t0563200-01 | Rice | cytosol | 70.4 | 74.89 |
| GSMUA_AchrUn_... | Banana | cytosol | 48.0 | 71.86 |
| Zm00001d031887_P001 | Maize | nucleus | 77.2 | 71.75 |
| KXG25365 | Sorghum | nucleus | 77.2 | 71.48 |
| Zm00001d049906_P001 | Maize | nucleus | 74.8 | 70.57 |
| GSMUA_Achr2P04080_001 | Banana | cytosol | 65.6 | 69.79 |
| GSMUA_Achr11P... | Banana | cytosol | 46.4 | 67.44 |
| KRG90376 | Soybean | nucleus | 67.6 | 63.06 |
| VIT_05s0049g00100.t01 | Wine grape | cytosol | 65.2 | 62.69 |
| KRH31728 | Soybean | cytosol | 66.4 | 61.48 |
| Os07t0235200-01 | Rice | endoplasmic reticulum, extracellular | 46.4 | 61.38 |
| TraesCS6B01G439500.1 | Wheat | cytosol, extracellular, peroxisome | 68.8 | 58.7 |
| GSMUA_Achr5P19550_001 | Banana | cytosol | 62.8 | 58.15 |
| KRH34516 | Soybean | cytosol, nucleus, peroxisome | 67.2 | 57.93 |
| Solyc09g089620.1.1 | Tomato | nucleus | 64.4 | 56.29 |
| AT4G14465.1 | Thale cress | cytosol, nucleus, plastid | 63.2 | 56.23 |
| PGSC0003DMT400044451 | Potato | nucleus | 64.0 | 56.14 |
| CDY23160 | Canola | cytosol, nucleus, vacuole | 62.0 | 55.56 |
| CDY12779 | Canola | cytosol, nucleus, vacuole | 62.0 | 54.96 |
| KRG92293 | Soybean | cytosol, mitochondrion, nucleus | 66.4 | 54.79 |
| TraesCS4B01G209800.1 | Wheat | cytosol, nucleus, plastid | 53.2 | 51.95 |
| TraesCS6B01G209300.1 | Wheat | nucleus | 53.6 | 43.37 |
| TraesCS7B01G187300.1 | Wheat | cytosol, nucleus, peroxisome | 48.8 | 42.96 |
| TraesCS1B01G056000.1 | Wheat | mitochondrion | 55.6 | 42.77 |
| TraesCS2B01G470600.1 | Wheat | cytosol, nucleus, peroxisome | 51.2 | 40.89 |
| TraesCS3B01G198900.1 | Wheat | plastid | 32.0 | 38.1 |
| TraesCS6B01G306100.1 | Wheat | plastid | 50.0 | 37.99 |
| TraesCS7B01G297300.1 | Wheat | cytosol | 43.6 | 37.33 |
| TraesCS7B01G193900.1 | Wheat | cytosol, nucleus, peroxisome | 48.0 | 37.27 |
| TraesCS5B01G243200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 40.0 | 29.76 |
| TraesCS3B01G551700.1 | Wheat | cytosol | 34.4 | 28.86 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G001100.1 | EnsemblPlantsGene:TraesCS4B01G001100 | Gene3D:3.30.1330.80 | InterPro:AT-hook_nuclear | InterPro:IPR005175 | InterPro:PPC_dom |
| PANTHER:PTHR31100 | PANTHER:PTHR31100:SF3 | PFAM:PF03479 | PFscan:PS51742 | PIRSF:PIRSF016021 | SEG:seg |
| SUPFAM:SSF117856 | TIGR:cd11378 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr4B:-:652933..653685
Molecular Weight (calculated)
25319.1 Da
IEP (calculated)
8.502
GRAVY (calculated)
-0.234
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAPKVDGES SNSGGGSGQD DEPKEGAVVV PANRRPRGRP PGSKNKPKPP IFVTRDSPNA LRSHVMEVAG GADVAESIAH FSRRRQRGVC VLSGAGTVAD
101: VALRQPSAPG AVVALRGRFE ILSLTGTFLP GPSPPGSTGL TVYLAGGQGQ VVGGSVVGAL TAAGPVMVIA STFANATYER LPLDDAEEDH HQLDAARRHG
201: APGAGVPLPP MMAGDPSATG MPMYGVPPNL MPGGGGHAAP EWAAHARPPY
101: VALRQPSAPG AVVALRGRFE ILSLTGTFLP GPSPPGSTGL TVYLAGGQGQ VVGGSVVGAL TAAGPVMVIA STFANATYER LPLDDAEEDH HQLDAARRHG
201: APGAGVPLPP MMAGDPSATG MPMYGVPPNL MPGGGGHAAP EWAAHARPPY
001: MANPWWTGQV NLSGLETTPP GSSQLKKPDL HISMNMAMDS GHNNHHHHQE VDNNNNDDDR DNLSGDDHEP REGAVEAPTR RPRGRPAGSK NKPKPPIFVT
101: RDSPNALKSH VMEIASGTDV IETLATFARR RQRGICILSG NGTVANVTLR QPSTAAVAAA PGGAAVLALQ GRFEILSLTG SFLPGPAPPG STGLTIYLAG
201: GQGQVVGGSV VGPLMAAGPV MLIAATFSNA TYERLPLEEE EAAERGGGGG SGGVVPGQLG GGGSPLSSGA GGGDGNQGLP VYNMPGNLVS NGGSGGGGQM
301: SGQEAYGWAQ ARSGF
101: RDSPNALKSH VMEIASGTDV IETLATFARR RQRGICILSG NGTVANVTLR QPSTAAVAAA PGGAAVLALQ GRFEILSLTG SFLPGPAPPG STGLTIYLAG
201: GQGQVVGGSV VGPLMAAGPV MLIAATFSNA TYERLPLEEE EAAERGGGGG SGGVVPGQLG GGGSPLSSGA GGGDGNQGLP VYNMPGNLVS NGGSGGGGQM
301: SGQEAYGWAQ ARSGF
Arabidopsis Description
AHL19AT-hook motif nuclear-localized protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR17]
SUBAcon: [mitochondrion,peroxisome,cytosol]
SUBAcon: [mitochondrion,peroxisome,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.