Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G228800.1 | Wheat | nucleus | 92.55 | 93.71 |
| TraesCS7A01G225700.1 | Wheat | nucleus | 93.17 | 92.88 |
| HORVU7Hr1G046930.1 | Barley | cytosol, nucleus, peroxisome | 86.34 | 87.97 |
| KXG19929 | Sorghum | nucleus | 64.6 | 65.41 |
| Zm00001d045928_P001 | Maize | nucleus | 62.11 | 65.36 |
| Os06t0326900-01 | Rice | nucleus | 64.29 | 64.29 |
| TraesCS6B01G306100.1 | Wheat | plastid | 65.53 | 64.13 |
| GSMUA_Achr9P12320_001 | Banana | plastid | 54.66 | 62.63 |
| Solyc04g082810.2.1 | Tomato | cytosol, nucleus, peroxisome | 42.55 | 55.92 |
| PGSC0003DMT400025705 | Potato | plastid | 43.17 | 53.46 |
| KRH51551 | Soybean | plastid | 33.85 | 53.43 |
| CDY20404 | Canola | nucleus | 40.68 | 48.34 |
| CDX87591 | Canola | nucleus | 41.93 | 48.21 |
| TraesCS4B01G001100.1 | Wheat | cytosol, nucleus, peroxisome | 37.27 | 48.0 |
| CDY45983 | Canola | nucleus | 42.24 | 47.22 |
| CDX96613 | Canola | nucleus | 44.1 | 47.18 |
| CDX88286 | Canola | cytosol, endoplasmic reticulum, nucleus | 40.37 | 47.1 |
| Bra008262.1-P | Field mustard | nucleus | 41.93 | 47.04 |
| Bra015738.1-P | Field mustard | nucleus | 41.93 | 46.88 |
| Bra012256.1-P | Field mustard | nucleus | 44.72 | 46.6 |
| AT1G20900.1 | Thale cress | nucleus | 44.72 | 46.3 |
| CDY33658 | Canola | nucleus | 41.93 | 46.23 |
| CDY31511 | Canola | nucleus | 38.2 | 45.72 |
| TraesCS7B01G187300.1 | Wheat | cytosol, nucleus, peroxisome | 40.06 | 45.42 |
| Bra016444.1-P | Field mustard | nucleus | 44.41 | 45.4 |
| CDY01347 | Canola | nucleus | 38.2 | 45.22 |
| AT1G76500.1 | Thale cress | nucleus | 41.93 | 44.7 |
| CDY31858 | Canola | nucleus | 37.89 | 44.69 |
| TraesCS4B01G209800.1 | Wheat | cytosol, nucleus, plastid | 35.4 | 44.53 |
| CDY29494 | Canola | nucleus | 37.89 | 44.53 |
| TraesCS7B01G297300.1 | Wheat | cytosol | 39.44 | 43.49 |
| Bra025854.1-P | Field mustard | nucleus | 38.51 | 43.36 |
| TraesCS6B01G439500.1 | Wheat | cytosol, extracellular, peroxisome | 39.44 | 43.34 |
| Bra003717.1-P | Field mustard | nucleus | 38.51 | 43.21 |
| TraesCS6B01G072300.1 | Wheat | nucleus | 37.58 | 42.91 |
| VIT_18s0122g00590.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 41.93 | 42.72 |
| CDX68095 | Canola | cytosol | 35.71 | 42.59 |
| TraesCS2B01G470600.1 | Wheat | cytosol, nucleus, peroxisome | 41.3 | 42.49 |
| TraesCS6B01G209300.1 | Wheat | nucleus | 40.68 | 42.39 |
| CDX85952 | Canola | cytosol | 35.09 | 41.54 |
| TraesCS1B01G056000.1 | Wheat | mitochondrion | 39.44 | 39.08 |
| TraesCS3B01G198900.1 | Wheat | plastid | 24.53 | 37.62 |
| TraesCS3B01G551700.1 | Wheat | cytosol | 25.78 | 27.85 |
| TraesCS5B01G243200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 28.26 | 27.08 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G193900.1 | EnsemblPlantsGene:TraesCS7B01G193900 | Gene3D:3.30.1330.80 | InterPro:AT-hook_nuclear | InterPro:IPR005175 | InterPro:PPC_dom |
| PANTHER:PTHR31100 | PANTHER:PTHR31100:SF5 | PFAM:PF03479 | PFscan:PS51742 | PIRSF:PIRSF016021 | SEG:seg |
| SUPFAM:SSF117856 | TIGR:cd11378 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr7B:+:333129260..333130228
Molecular Weight (calculated)
32491.4 Da
IEP (calculated)
6.601
GRAVY (calculated)
-0.163
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGMDPGAGE PRGASHYLDL LLAQQQQSTP FSPIAHVKAE HHSMASPVRS PASGAGAEQH GGGGDQQQPS SSAMVLADGG GGSARPMRRP RGRPPGSKNK
101: PKPPIIVILD SPNVFHSHIL EVADGADVVE CLAEYARRRR RGVCVLSGAG VVTNVSLRQP RASSSSPGGL VATLHGQFEI LSLTGTVLPP AAPPAASSLA
201: VYLAGWQGQV VGGSVVGQLV AAGPVFLMAA SFANAVYERL PLEVEAEEAG TATAAREAQG EGAAGQPPGA VPQQPAASQS SEVTGGEAGG HGMPLCNLEG
301: NVGSYQLPGP GDNLGTWSGV RP
101: PKPPIIVILD SPNVFHSHIL EVADGADVVE CLAEYARRRR RGVCVLSGAG VVTNVSLRQP RASSSSPGGL VATLHGQFEI LSLTGTVLPP AAPPAASSLA
201: VYLAGWQGQV VGGSVVGQLV AAGPVFLMAA SFANAVYERL PLEVEAEEAG TATAAREAQG EGAAGQPPGA VPQQPAASQS SEVTGGEAGG HGMPLCNLEG
301: NVGSYQLPGP GDNLGTWSGV RP
001: MDGGYDQSGG ASRYFHNLFR PELHHQLQPQ PQLHPLPQPQ PQPQPQQQNS DDESDSNKDP GSDPVTSGST GKRPRGRPPG SKNKPKPPVI VTRDSPNVLR
101: SHVLEVSSGA DIVESVTTYA RRRGRGVSIL SGNGTVANVS LRQPATTAAH GANGGTGGVV ALHGRFEILS LTGTVLPPPA PPGSGGLSIF LSGVQGQVIG
201: GNVVAPLVAS GPVILMAASF SNATFERLPL EDEGGEGGEG GEVGEGGGGE GGPPPATSSS PPSGAGQGQL RGNMSGYDQF AGDPHLLGWG AAAAAAPPRP
301: AF
101: SHVLEVSSGA DIVESVTTYA RRRGRGVSIL SGNGTVANVS LRQPATTAAH GANGGTGGVV ALHGRFEILS LTGTVLPPPA PPGSGGLSIF LSGVQGQVIG
201: GNVVAPLVAS GPVILMAASF SNATFERLPL EDEGGEGGEG GEVGEGGGGE GGPPPATSSS PPSGAGQGQL RGNMSGYDQF AGDPHLLGWG AAAAAAPPRP
301: AF
Arabidopsis Description
AHL29AT-hook motif nuclear-localized protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.