Factsheet for Bra003717.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68095	Canola	cytosol	93.73	99.63
Bra015738.1-P	Field mustard	nucleus	81.88	81.6
Bra008262.1-P	Field mustard	nucleus	78.05	78.05
AT1G76500.1	Thale cress	nucleus	81.53	77.48
Bra016444.1-P	Field mustard	nucleus	73.52	66.98
Bra012256.1-P	Field mustard	nucleus	70.38	65.37
Bra025854.1-P	Field mustard	nucleus	64.81	65.03
KRH51551	Soybean	plastid	41.46	58.33
Solyc04g082810.2.1	Tomato	cytosol, nucleus, peroxisome	48.78	57.14
PGSC0003DMT400025705	Potato	plastid	49.48	54.62
GSMUA_Achr9P12320_001	Banana	plastid	44.25	45.2
Zm00001d051620_P001	Maize	plastid	49.48	44.8
EES05630	Sorghum	cytosol, mitochondrion, nucleus, plastid	50.87	44.51
TraesCS6D01G258400.1	Wheat	plastid	50.87	44.38
TraesCS6B01G306100.1	Wheat	plastid	50.87	44.38
TraesCS6A01G277700.1	Wheat	plastid	50.52	44.34
VIT_18s0122g00590.t01	Wine grape	endoplasmic reticulum, plasma membrane	48.78	44.3
Zm00001d017825_P001	Maize	plastid	49.83	44.14
HORVU6Hr1G070090.1	Barley	plastid	50.87	44.11
Os02t0713700-01	Rice	cytosol, mitochondrion, nucleus, plastid	51.57	44.05
Bra004732.1-P	Field mustard	plastid	39.72	43.68
Bra011612.1-P	Field mustard	cytosol, nucleus, peroxisome	44.95	42.72
Bra012639.1-P	Field mustard	cytosol	43.21	42.61
Zm00001d045928_P001	Maize	nucleus	44.95	42.16
Bra000281.1-P	Field mustard	plastid	38.33	42.15
KXG19929	Sorghum	nucleus	46.69	42.14
Bra040183.1-P	Field mustard	cytosol	42.51	41.64
Bra017324.1-P	Field mustard	cytosol, nucleus, peroxisome	41.12	41.26
Bra016853.1-P	Field mustard	plastid	37.28	41.0
Bra003217.1-P	Field mustard	nucleus	42.16	40.6
Bra007176.1-P	Field mustard	plastid	41.81	40.4
Bra005355.1-P	Field mustard	cytosol	39.72	40.14
Os06t0326900-01	Rice	nucleus	44.6	39.75
Bra004911.1-P	Field mustard	nucleus	42.51	39.61
Bra040184.1-P	Field mustard	cytosol, nucleus, peroxisome	43.21	39.49
HORVU7Hr1G046930.1	Barley	cytosol, nucleus, peroxisome	43.21	39.24
Zm00001d046696_P001	Maize	cytosol, nucleus, peroxisome	36.59	38.75
TraesCS7A01G225700.1	Wheat	nucleus	43.55	38.7
TraesCS7D01G228800.1	Wheat	nucleus	42.86	38.68
Bra039338.1-P	Field mustard	nucleus	41.46	38.64
TraesCS7B01G193900.1	Wheat	cytosol, nucleus, peroxisome	43.21	38.51
Bra014735.1-P	Field mustard	plastid	40.42	37.78
EER88668	Sorghum	cytosol	35.54	37.78
Bra026211.1-P	Field mustard	plastid	26.83	37.56
Bra040135.1-P	Field mustard	cytosol, nucleus, peroxisome	36.93	35.93
TraesCS7B01G297300.1	Wheat	cytosol	35.54	34.93
TraesCS7A01G395400.1	Wheat	cytosol	34.84	34.6
Bra019355.1-P	Field mustard	nucleus	39.02	34.25
Bra023007.1-P	Field mustard	cytosol, nucleus, peroxisome	39.72	33.63
Bra013649.1-P	Field mustard	nucleus	37.63	33.13
Bra000593.1-P	Field mustard	cytosol	29.97	32.7
HORVU7Hr1G093230.2	Barley	cytosol	33.8	32.01

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	EnsemblPlantsGene:Bra003717	EnsemblPlants:Bra003717.1	EnsemblPlants:Bra003717.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175
UniProt:M4CHN4	PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100
PANTHER:PTHR31100:SF43	SUPFAM:SSF117856	UniParc:UPI0002541559	SEG:seg	:	:

Description

AT1G76500 (E=1e-080) SOB3, AHL29 | SOB3 (SUPPRESSOR OF PHYB-4#3); DNA binding

Coordinates

chrA07:-:14673382..14674245

Molecular Weight (calculated)

29739.7 Da

IEP (calculated)

7.076

GRAVY (calculated)

-0.550

Length

287 amino acids

Sequence
(BLAST)

001: MDGGYDQSGH SRYFHNLFRP ELQHQLQPQP QPQPQPQPQP QPQSDDESDS NNKYPGQPDS DQVTSGSTSG KRPRGRPPGS KNKPKPPVIV TRDSPNVLRS
101: HVLEVSSGAD IIESVNNYAR RRGRGVSILS GNGTVANLTL RQPVTTHGNN GGTEAGAGGV VTLRGRFEIL SITGAVLPPP APPGCGGLSI FVAGEQGRVI
201: GGRVVAPLVA SGPVILMAAS FSNATFERLP LEEEGGEGGG DVGGGVPPPA TSETAPSGVA QGELRVNMSG YDQFSGWGAG AASRPSF

Best Arabidopsis Sequence Match ( AT1G76500.1 )
(BLAST)

001: MDGGYDQSGG ASRYFHNLFR PELHHQLQPQ PQLHPLPQPQ PQPQPQQQNS DDESDSNKDP GSDPVTSGST GKRPRGRPPG SKNKPKPPVI VTRDSPNVLR
101: SHVLEVSSGA DIVESVTTYA RRRGRGVSIL SGNGTVANVS LRQPATTAAH GANGGTGGVV ALHGRFEILS LTGTVLPPPA PPGSGGLSIF LSGVQGQVIG
201: GNVVAPLVAS GPVILMAASF SNATFERLPL EDEGGEGGEG GEVGEGGGGE GGPPPATSSS PPSGAGQGQL RGNMSGYDQF AGDPHLLGWG AAAAAAPPRP
301: AF

Arabidopsis Description

AHL29AT-hook motif nuclear-localized protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.