Factsheet for Bra011612.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75499	Canola	cytosol, nucleus, peroxisome	98.68	98.68
CDX69136	Canola	cytosol, nucleus, peroxisome	98.68	98.68
AT4G35390.1	Thale cress	cytosol	90.4	91.3
VIT_03s0038g04110.t01	Wine grape	nucleus	58.28	60.9
Bra015738.1-P	Field mustard	nucleus	45.36	47.57
Bra008262.1-P	Field mustard	nucleus	44.37	46.69
Bra012256.1-P	Field mustard	nucleus	47.02	45.95
Bra004732.1-P	Field mustard	plastid	39.07	45.21
Bra016444.1-P	Field mustard	nucleus	47.02	45.08
Bra003717.1-P	Field mustard	nucleus	42.72	44.95
Bra000281.1-P	Field mustard	plastid	38.41	44.44
Bra040183.1-P	Field mustard	cytosol	43.05	44.37
Bra025854.1-P	Field mustard	nucleus	41.72	44.06
Bra005355.1-P	Field mustard	cytosol	41.39	44.01
Bra017324.1-P	Field mustard	cytosol, nucleus, peroxisome	41.39	43.71
Bra012639.1-P	Field mustard	cytosol	41.39	42.96
Bra016853.1-P	Field mustard	plastid	36.76	42.53
Bra039338.1-P	Field mustard	nucleus	42.38	41.56
Bra004911.1-P	Field mustard	nucleus	42.38	41.56
Bra019355.1-P	Field mustard	nucleus	41.06	37.92
Bra013649.1-P	Field mustard	nucleus	40.4	37.42
Bra040184.1-P	Field mustard	cytosol, nucleus, peroxisome	38.74	37.26
Bra023007.1-P	Field mustard	cytosol, nucleus, peroxisome	41.72	37.17
Bra003217.1-P	Field mustard	nucleus	36.42	36.91
Bra026211.1-P	Field mustard	plastid	24.83	36.59
Bra007176.1-P	Field mustard	plastid	35.76	36.36
Bra000593.1-P	Field mustard	cytosol	30.79	35.36
Bra014735.1-P	Field mustard	plastid	35.1	34.53
Bra040135.1-P	Field mustard	cytosol, nucleus, peroxisome	33.44	34.24

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	EnsemblPlantsGene:Bra011612	EnsemblPlants:Bra011612.1	EnsemblPlants:Bra011612.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009938	GO:GO:0009987	GO:GO:0043621	InterPro:IPR005175
UniProt:M4D555	PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100
PANTHER:PTHR31100:SF16	SUPFAM:SSF117856	UniParc:UPI0002546F75	SEG:seg	:	:

Description

AT4G35390 (E=3e-084) AGF1 | AGF1 (AT-hook protein of GA feedback 1); transcription factor

Coordinates

chrA01:-:1413633..1414541

Molecular Weight (calculated)

30509.7 Da

IEP (calculated)

6.680

GRAVY (calculated)

-0.363

Length

302 amino acids

Sequence
(BLAST)

001: MSGYMHPLLG QELHLQRPED SRTPPDHNNM ELNRSEADEA KGETTPTGGG AANSATASGS SSGRRPRGRP AGSKNKPKPP TIITRDSPNV LRSHVLEVTS
101: GSDISEAVST YATRRGCGVC VLSATGAVTN VTIRQPAAPT GGGVITLHGR FEILSLTGTA LPPPAPPGAG GLTVYLAGGQ GQVVGGNVAG SLIASGPVVL
201: MAASFANAVY DRLPMEEEET PPPRTTGVQQ PQPAASQSSE VTRSEAQMGE SNMGGRNGGV AFYNLGMNMN NFQFSGGDIF GLSGGGGGGG GGDGGGVTRP
301: AF

Best Arabidopsis Sequence Match ( AT4G35390.1 )
(BLAST)

001: MSSYMHPLLG QELHLQRPED SRTPPDQNNM ELNRSEADEA KAETTPTGGA TSSATASGSS SGRRPRGRPA GSKNKPKPPT IITRDSPNVL RSHVLEVTSG
101: SDISEAVSTY ATRRGCGVCI ISGTGAVTNV TIRQPAAPAG GGVITLHGRF DILSLTGTAL PPPAPPGAGG LTVYLAGGQG QVVGGNVAGS LIASGPVVLM
201: AASFANAVYD RLPIEEEETP PPRTTGVQQQ QPEASQSSEV TGSGAQACES NLQGGNGGGG VAFYNLGMNM NNFQFSGGDI YGMSGGSGGG GGGATRPAF

Arabidopsis Description

AHL25AT-hook motif nuclear-localized protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q6DBQ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.