Factsheet for AT4G35390.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69136	Canola	cytosol, nucleus, peroxisome	91.3	90.4
Bra011612.1-P	Field mustard	cytosol, nucleus, peroxisome	91.3	90.4
CDX75499	Canola	cytosol, nucleus, peroxisome	90.64	89.74
VIT_03s0038g04110.t01	Wine grape	nucleus	59.87	61.94
AT1G20900.1	Thale cress	nucleus	48.83	46.95
AT1G76500.1	Thale cress	nucleus	45.15	44.7
AT4G17800.1	Thale cress	cytosol	43.48	44.52
AT2G35270.1	Thale cress	nucleus	42.14	44.21
AT2G42940.1	Thale cress	plastid	37.46	43.58
AT3G60870.1	Thale cress	nucleus	38.13	43.02
AT4G14465.1	Thale cress	cytosol, nucleus, plastid	38.8	41.28
AT2G45430.1	Thale cress	nucleus	42.81	40.38
AT1G14490.2	Thale cress	plastid	29.77	39.56
AT3G04570.1	Thale cress	cytosol, mitochondrion, peroxisome	40.47	38.41
AT4G22810.1	Thale cress	nucleus	41.47	38.27
AT4G12050.1	Thale cress	cytosol, nucleus, plastid	42.14	37.17
AT3G55560.1	Thale cress	plastid	38.46	37.1
AT5G49700.1	Thale cress	nucleus	33.44	36.23

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	EntrezGene:829692	ProteinID:AEE86506.1	Symbol:AGF1	InterPro:AT-hook_nuclear
ArrayExpress:AT4G35390	EnsemblPlantsGene:AT4G35390	RefSeq:AT4G35390	TAIR:AT4G35390	RefSeq:AT4G35390-TAIR-G	EnsemblPlants:AT4G35390.1
TAIR:AT4G35390.1	Unigene:At.31419	EMBL:BR000361	EMBL:BT014971	EMBL:BT015845	ProteinID:CAA18730.1
ProteinID:CAB80256.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009938	GO:GO:0009987	GO:GO:0043621
InterPro:IPR005175	RefSeq:NP_195265.2	PFAM:PF03479	PIRSF:PIRSF016021	PO:PO:0004714	PO:PO:0007131
PO:PO:0009025	PO:PO:0009046	PO:PO:0009047	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100
PANTHER:PTHR31100:SF16	UniProt:Q6DBQ1	SUPFAM:SSF117856	UniParc:UPI0000196EF8	SEG:seg	:

Description

AHL25AT-hook motif nuclear-localized protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q6DBQ1]

Coordinates

chr4:+:16829326..16830692

Molecular Weight (calculated)

30150.2 Da

IEP (calculated)

6.120

GRAVY (calculated)

-0.343

Length

299 amino acids

Sequence
(BLAST)

001: MSSYMHPLLG QELHLQRPED SRTPPDQNNM ELNRSEADEA KAETTPTGGA TSSATASGSS SGRRPRGRPA GSKNKPKPPT IITRDSPNVL RSHVLEVTSG
101: SDISEAVSTY ATRRGCGVCI ISGTGAVTNV TIRQPAAPAG GGVITLHGRF DILSLTGTAL PPPAPPGAGG LTVYLAGGQG QVVGGNVAGS LIASGPVVLM
201: AASFANAVYD RLPIEEEETP PPRTTGVQQQ QPEASQSSEV TGSGAQACES NLQGGNGGGG VAFYNLGMNM NNFQFSGGDI YGMSGGSGGG GGGATRPAF

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.