Factsheet for AT2G42940.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79838	Canola	plastid	93.0	91.92
Bra004732.1-P	Field mustard	plastid	93.0	91.57
CDY53650	Canola	plastid	92.61	91.54
Bra000281.1-P	Field mustard	plastid	89.88	88.51
CDY14862	Canola	plastid	88.72	87.36
Bra016853.1-P	Field mustard	plastid	88.33	86.97
CDY70947	Canola	plastid	88.33	86.97
KRH73632	Soybean	cytosol, endoplasmic reticulum, peroxisome	64.98	67.34
KRH14482	Soybean	cytosol, mitochondrion, peroxisome	64.59	66.67
VIT_12s0028g00070.t01	Wine grape	cytoskeleton, cytosol, plastid	66.93	64.18
PGSC0003DMT400044573	Potato	cytosol	59.14	60.56
Solyc07g056300.1.1	Tomato	cytosol, nucleus, peroxisome	58.75	60.16
AT2G35270.1	Thale cress	nucleus	45.91	41.4
AT3G60870.1	Thale cress	nucleus	42.41	41.13
AT4G14465.1	Thale cress	cytosol, nucleus, plastid	42.02	38.43
AT2G45430.1	Thale cress	nucleus	46.3	37.54
AT3G04570.1	Thale cress	cytosol, mitochondrion, peroxisome	45.91	37.46
AT4G35390.1	Thale cress	cytosol	43.58	37.46
AT4G17800.1	Thale cress	cytosol	42.02	36.99
AT1G20900.1	Thale cress	nucleus	44.75	36.98
AT1G76500.1	Thale cress	nucleus	42.8	36.42
AT4G22810.1	Thale cress	nucleus	45.53	36.11
AT3G55560.1	Thale cress	plastid	43.19	35.81
AT1G14490.2	Thale cress	plastid	30.35	34.67
AT4G12050.1	Thale cress	cytosol, nucleus, plastid	45.53	34.51
AT5G49700.1	Thale cress	nucleus	31.52	29.35

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	EntrezGene:818895	UniProt:A0A178VQG3	ProteinID:AAD21715.1	ProteinID:AAM15286.1
ProteinID:AEC10189.1	InterPro:AT-hook_nuclear	ArrayExpress:AT2G42940	EnsemblPlantsGene:AT2G42940	RefSeq:AT2G42940	TAIR:AT2G42940
RefSeq:AT2G42940-TAIR-G	EnsemblPlants:AT2G42940.1	TAIR:AT2G42940.1	Unigene:At.45674	EMBL:BR000352	EMBL:BT010721
EMBL:BT010995	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680
GO:GO:0003682	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009791
GO:GO:0009987	GO:GO:0010208	GO:GO:0010228	GO:GO:0010529	GO:GO:0016043	GO:GO:0019538
GO:GO:0031490	GO:GO:0035067	GO:GO:1900111	InterPro:IPR005175	RefSeq:NP_181822.1	ProteinID:OAP07343.1
PFAM:PF03479	PIRSF:PIRSF016021	PO:PO:0000293	PO:PO:0007611	PO:PO:0009031	PO:PO:0009046
PO:PO:0025022	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100	PANTHER:PTHR31100:SF17	UniProt:Q9SJG4
SUPFAM:SSF117856	TMHMM:TMhelix	UniParc:UPI000009D542	SEG:seg	:	:

Description

AHL16AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VQG3]

Coordinates

chr2:-:17862254..17863456

Molecular Weight (calculated)

27005.4 Da

IEP (calculated)

9.521

GRAVY (calculated)

-0.227

Length

257 amino acids

Sequence
(BLAST)

001: MAGGTALTPT SVGSKSVPMR NHEATERGNT NNNLRALPKA VQPVSSIEGE MAKRPRGRPA GSKNKPKPPI IVTHDSPNSL RANAVEISSG CDICETLSDF
101: ARRKQRGLCI LSANGCVTNV TLRQPASSGA IVTLHGRYEI LSLLGSILPP PAPLGITGLT IYLAGPQGQV VGGGVVGGLI ASGPVVLMAA SFMNAVFDRL
201: PMDDDEAASM QNQQYYQNGR SRPLDDIHGL PQNLLTNGNS ASDIYSWGPA QRVMSKP

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.