Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytoskeleton, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- cytoskeleton 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_03s0038g01440.t01 | |
| VIT_06s0004g00390.t01 | |
| VIT_17s0000g06020.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G42940.1 | VIT_17s0000g06020.t01 | AT3G47620.1 | 21798944 |
| AT2G42940.1 | VIT_03s0038g01440.t01 | AT4G38800.1 | 21798944 |
| AT2G42940.1 | VIT_06s0004g00390.t01 | AT5G64780.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH14482 | Soybean | cytosol, mitochondrion, peroxisome | 73.88 | 79.52 |
| KRH73632 | Soybean | cytosol, endoplasmic reticulum, peroxisome | 72.76 | 78.63 |
| Solyc07g056300.1.1 | Tomato | cytosol, nucleus, peroxisome | 66.42 | 70.92 |
| PGSC0003DMT400044573 | Potato | cytosol | 66.42 | 70.92 |
| AT2G42940.1 | Thale cress | plastid | 64.18 | 66.93 |
| CDX79838 | Canola | plastid | 63.81 | 65.77 |
| Bra004732.1-P | Field mustard | plastid | 63.81 | 65.52 |
| CDY53650 | Canola | plastid | 63.43 | 65.38 |
| Bra000281.1-P | Field mustard | plastid | 62.69 | 64.37 |
| CDY14862 | Canola | plastid | 61.94 | 63.6 |
| CDY70947 | Canola | plastid | 61.57 | 63.22 |
| Bra016853.1-P | Field mustard | plastid | 61.57 | 63.22 |
| VIT_05s0049g00100.t01 | Wine grape | cytosol | 47.76 | 49.23 |
| VIT_15s0048g00780.t01 | Wine grape | nucleus | 52.99 | 47.33 |
| VIT_02s0025g05100.t01 | Wine grape | nucleus | 52.99 | 47.02 |
| VIT_15s0045g01130.t01 | Wine grape | cytosol, plastid | 42.91 | 46.75 |
| VIT_02s0012g00880.t01 | Wine grape | cytosol | 47.39 | 45.04 |
| VIT_14s0081g00670.t01 | Wine grape | mitochondrion | 48.51 | 44.67 |
| VIT_03s0038g04110.t01 | Wine grape | nucleus | 47.01 | 43.6 |
| VIT_13s0019g02080.t01 | Wine grape | nucleus | 48.88 | 40.06 |
| VIT_18s0122g00590.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 44.78 | 37.97 |
| VIT_18s0001g07380.t01 | Wine grape | nucleus | 29.1 | 31.84 |
Protein Annotations
| EntrezGene:100253941 | wikigene:100253941 | Gene3D:3.30.1330.80 | MapMan:35.1 | InterPro:AT-hook_nuclear | ProteinID:CCB47473 |
| ProteinID:CCB47473.1 | UniProt:F6H5C6 | EMBL:FN595235 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003680 | GO:GO:0003682 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006464 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 |
| GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010208 | GO:GO:0010228 | GO:GO:0010529 | GO:GO:0016043 |
| GO:GO:0019538 | GO:GO:0031490 | GO:GO:0035067 | GO:GO:1900111 | InterPro:IPR005175 | EntrezGene:LOC100253941 |
| wikigene:LOC100253941 | PFAM:PF03479 | PIRSF:PIRSF016021 | InterPro:PPC_dom | PFscan:PS51742 | PANTHER:PTHR31100 |
| PANTHER:PTHR31100:SF17 | SUPFAM:SSF117856 | UniParc:UPI000210A099 | ArrayExpress:VIT_12s0028g00070 | EnsemblPlantsGene:VIT_12s0028g00070 | EnsemblPlants:VIT_12s0028g00070.t01 |
| RefSeq:XP_002279677 | RefSeq:XP_002279677.2 | SEG:seg | : | : | : |
Description
AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:F6H5C6]
Coordinates
chr12:-:737401..738210
Molecular Weight (calculated)
27888.7 Da
IEP (calculated)
9.805
GRAVY (calculated)
-0.096
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGGGGADP MVPSIGSKSA MDRNQEQVKG SNHRAGIDAI LMAPKVPKAM PAVPLASEGE ATRRPRGRPA GSKNKPKPPI IITRDSANAL RAHAMEVSSG
101: CDVSESLANF ARRKQRGICI LSGSGCVTNV TLRQPASSGA IVTLHGRFEI LSLLGSILPP PAPPGITGLT IYLAGAQGQV VGGGVVGALI ASGPVFVMAA
201: SFMNATFDRL PLDDDEVTTA VQSQHYQNGR HHHIDMSDLY GIPPNLLTNG TMLPEIYSWA PGRTLSKT
101: CDVSESLANF ARRKQRGICI LSGSGCVTNV TLRQPASSGA IVTLHGRFEI LSLLGSILPP PAPPGITGLT IYLAGAQGQV VGGGVVGALI ASGPVFVMAA
201: SFMNATFDRL PLDDDEVTTA VQSQHYQNGR HHHIDMSDLY GIPPNLLTNG TMLPEIYSWA PGRTLSKT
001: MAGGTALTPT SVGSKSVPMR NHEATERGNT NNNLRALPKA VQPVSSIEGE MAKRPRGRPA GSKNKPKPPI IVTHDSPNSL RANAVEISSG CDICETLSDF
101: ARRKQRGLCI LSANGCVTNV TLRQPASSGA IVTLHGRYEI LSLLGSILPP PAPLGITGLT IYLAGPQGQV VGGGVVGGLI ASGPVVLMAA SFMNAVFDRL
201: PMDDDEAASM QNQQYYQNGR SRPLDDIHGL PQNLLTNGNS ASDIYSWGPA QRVMSKP
101: ARRKQRGLCI LSANGCVTNV TLRQPASSGA IVTLHGRYEI LSLLGSILPP PAPLGITGLT IYLAGPQGQV VGGGVVGGLI ASGPVVLMAA SFMNAVFDRL
201: PMDDDEAASM QNQQYYQNGR SRPLDDIHGL PQNLLTNGNS ASDIYSWGPA QRVMSKP
Arabidopsis Description
AHL16AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VQG3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.