CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03466
KRH51422
KRH51427
KRH54542
KRH56919
KRH60729
KRH60733
KRH63357

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42940.1	KRH03466	AT3G47620.1	21798944
AT2G42940.1	KRH54542	AT3G47620.1	21798944
AT2G42940.1	KRH56919	AT3G47620.1	21798944
AT2G42940.1	KRH63357	AT3G47620.1	21798944
AT2G42940.1	KRH51422	AT4G38800.1	21798944
AT2G42940.1	KRH51427	AT4G38800.1	21798944
AT2G42940.1	KRH60729	AT4G38800.1	21798944
AT2G42940.1	KRH60733	AT4G38800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73632	Soybean	cytosol, endoplasmic reticulum, peroxisome	96.39	96.77
VIT_12s0028g00070.t01	Wine grape	cytoskeleton, cytosol, plastid	79.52	73.88
PGSC0003DMT400044573	Potato	cytosol	67.07	66.53
Solyc07g056300.1.1	Tomato	cytosol, nucleus, peroxisome	66.67	66.14
AT2G42940.1	Thale cress	plastid	66.67	64.59
Bra004732.1-P	Field mustard	plastid	65.86	62.84
CDX79838	Canola	plastid	65.46	62.69
CDY53650	Canola	plastid	65.06	62.31
Bra000281.1-P	Field mustard	plastid	65.06	62.07
CDY14862	Canola	plastid	63.45	60.54
Bra016853.1-P	Field mustard	plastid	63.05	60.15
CDY70947	Canola	plastid	63.05	60.15
KRH77205	Soybean	nucleus	49.8	49.6
KRH28289	Soybean	cytosol	49.8	49.6
KRH51551	Soybean	plastid	39.36	48.04
KRH57320	Soybean	nucleus	53.82	47.35
KRH28008	Soybean	nucleus	56.22	46.98
KRH04051	Soybean	nucleus	53.82	46.69
KRH77431	Soybean	nucleus	55.82	46.33
KRH31728	Soybean	cytosol	50.2	46.3
KRG90376	Soybean	nucleus	49.4	45.9
KRH76289	Soybean	nucleus	52.61	45.49
KRH00993	Soybean	nucleus	48.59	45.15
KRH40225	Soybean	nucleus	48.19	44.44
KRH04340	Soybean	cytosol	43.37	43.03
KRH73062	Soybean	cytosol	39.36	42.79
KRH58197	Soybean	cytosol	47.39	42.75
KRH65251	Soybean	nucleus	52.21	41.94
KRG92616	Soybean	nucleus	46.18	41.52
KRH34516	Soybean	cytosol, nucleus, peroxisome	48.19	41.38
KRH15076	Soybean	nucleus	28.92	41.38
KRH34163	Soybean	nucleus	44.98	40.0
KRH31005	Soybean	nucleus	45.38	39.1
KRG92293	Soybean	cytosol, mitochondrion, nucleus	47.39	38.94
KRG97871	Soybean	nucleus	46.18	38.08
KRH16838	Soybean	nucleus	33.73	32.81
KRH72453	Soybean	nucleus	34.94	32.1
KRH52892	Soybean	nucleus	36.55	32.04
KRH62181	Soybean	nucleus	35.74	31.79

Protein Annotations

EMBL:ACUP02008504	EnsemblPlants:KRH14482	EnsemblPlantsGene:GLYMA_14G028600	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom
PANTHER:PTHR31100	PANTHER:PTHR31100:SF17	PFAM:PF03479	PFscan:PS51742	ProteinID:KRH14482	ProteinID:KRH14482.1
SEG:seg	SUPFAM:SSF117856	TMHMM:TMhelix	UniParc:UPI000233C0F7	UniProt:A0A0R0GFB4	MapMan:35.1

Description

hypothetical protein

Coordinates

chr14:-:2074152..2074901

Molecular Weight (calculated)

26366.8 Da

IEP (calculated)

9.703

GRAVY (calculated)

-0.146

Length

249 amino acids

Sequence
(BLAST)

001: MDRKQEQDKG NSNMSGIDVA LISPKVPKAV SPVSSAAAEG DTLRRPRGRP AGSKNKPKPP IIVTRDSANA LKAHAMEVSS GCDVNESLLN FARRKQRGLY
101: ILNGTGCVTN VTLRQPGSAG AIVTLHGRFE ILSLLGSILP PPAPPGITGL TIYLAGAQGQ VVGGAVVGAL IASGPLVIMA ASFMHATFDR LPLEDDELAA
201: AMQNQHYQNG RTHHLDISDL YAIPQNLLMN GTMPPEIYSW APGRNFSKT

Best Arabidopsis Sequence Match ( AT2G42940.1 )
(BLAST)

001: MAGGTALTPT SVGSKSVPMR NHEATERGNT NNNLRALPKA VQPVSSIEGE MAKRPRGRPA GSKNKPKPPI IVTHDSPNSL RANAVEISSG CDICETLSDF
101: ARRKQRGLCI LSANGCVTNV TLRQPASSGA IVTLHGRYEI LSLLGSILPP PAPLGITGLT IYLAGPQGQV VGGGVVGGLI ASGPVVLMAA SFMNAVFDRL
201: PMDDDEAASM QNQQYYQNGR SRPLDDIHGL PQNLLTNGNS ASDIYSWGPA QRVMSKP

Arabidopsis Description

AHL16AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VQG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.