CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16838	Soybean	nucleus	78.97	83.59
KRH62181	Soybean	nucleus	68.27	66.07
KRH52892	Soybean	nucleus	67.53	64.44
CDY21451	Canola	cytosol	52.77	58.37
CDX83182	Canola	cytosol	52.4	57.96
VIT_18s0001g07380.t01	Wine grape	nucleus	52.4	57.96
Bra000593.1-P	Field mustard	cytosol	54.98	56.65
AT1G14490.2	Thale cress	plastid	46.49	56.0
Bra026211.1-P	Field mustard	plastid	42.07	55.61
AT5G49700.1	Thale cress	nucleus	56.46	55.43
CDY45266	Canola	plastid	41.7	55.12
PGSC0003DMT400024250	Potato	cytosol, plastid	53.87	54.28
GSMUA_Achr7P19000_001	Banana	cytosol, plasma membrane, plastid	36.16	52.69
Solyc04g076220.2.1	Tomato	nucleus	60.89	49.11
GSMUA_Achr10P...	Banana	nucleus	49.08	47.67
Solyc12g087950.1.1	Tomato	nucleus	45.02	45.86
CDY65376	Canola	nucleus	45.02	44.36
PGSC0003DMT400005182	Potato	nucleus	43.54	44.03
GSMUA_Achr8P23410_001	Banana	cytosol	33.21	43.9
KRH77205	Soybean	nucleus	37.64	40.8
KRH28289	Soybean	cytosol	37.64	40.8
Os09t0464300-00	Rice	nucleus	49.08	39.82
KRH31728	Soybean	cytosol	39.48	39.63
KRG90376	Soybean	nucleus	39.11	39.55
GSMUA_AchrUn_...	Banana	nucleus	47.97	38.81
KRH00993	Soybean	nucleus	38.01	38.43
GSMUA_Achr3P06770_001	Banana	cytosol	32.1	38.33
KRH04340	Soybean	cytosol	35.42	38.25
Zm00001d020768_P001	Maize	cytosol	46.49	37.84
KRH51551	Soybean	plastid	28.41	37.75
KRH73062	Soybean	cytosol	31.73	37.55
KRH40225	Soybean	nucleus	37.27	37.41
KRH15076	Soybean	nucleus	23.99	37.36
TraesCS5D01G252500.1	Wheat	cytosol	45.02	36.42
Zm00001d005923_P001	Maize	nucleus	46.13	36.34
KRH58197	Soybean	cytosol	36.9	36.23
TraesCS5B01G243200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	44.65	36.01
TraesCS5A01G245800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	44.65	35.59
KRH31005	Soybean	nucleus	37.27	34.95
KRH14482	Soybean	cytosol, mitochondrion, peroxisome	32.1	34.94
KRH34516	Soybean	cytosol, nucleus, peroxisome	37.27	34.83
OQU89633	Sorghum	cytosol	44.65	34.18
Os08t0478466-01	Rice	nucleus	40.22	33.64
KRH57320	Soybean	nucleus	35.06	33.57
KRH73632	Soybean	cytosol, endoplasmic reticulum, peroxisome	30.63	33.47
KRH04051	Soybean	nucleus	35.42	33.45
KRH34163	Soybean	nucleus	34.32	33.21
KXG25333	Sorghum	cytosol	40.59	33.03
KRG92293	Soybean	cytosol, mitochondrion, nucleus	36.9	33.0
KRH76289	Soybean	nucleus	34.69	32.64
KRG97871	Soybean	nucleus	36.16	32.45
KRH28008	Soybean	nucleus	35.42	32.21
KRG92616	Soybean	nucleus	32.84	32.13
KRH77431	Soybean	nucleus	35.06	31.67
Zm00001d031826_P001	Maize	cytosol, endoplasmic reticulum, nucleus	33.95	31.29
KRH65251	Soybean	nucleus	33.95	29.68

Protein Annotations

EntrezGene:100811053	Gene3D:3.30.1330.80	MapMan:35.1	EMBL:ACUP02001212	InterPro:AT-hook_nuclear	EnsemblPlantsGene:GLYMA_02G213500
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:I1JGZ4
InterPro:IPR005175	EnsemblPlants:KRH72453	ProteinID:KRH72453	ProteinID:KRH72453.1	PFAM:PF03479	PIRSF:PIRSF016021
InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100	PANTHER:PTHR31100:SF1	SUPFAM:SSF117856	UniParc:UPI0002337664
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:39966501..39967977

Molecular Weight (calculated)

28327.3 Da

IEP (calculated)

8.023

GRAVY (calculated)

-0.254

Length

271 amino acids

Sequence
(BLAST)

001: MFSKLQPQHQ QQHQPFQFSR ECQTSEDDDS RSSGGPNTAV AQKSVLGGGG CSDGATIEVV RRPRGRPPGS KNRPKPPLII TREPEPAMSP FILEIPGGSD
101: VVEALARFSR RKNTGLCVLT GSGTVANVTL RQPSFSPAGA TVATVTFHGR FDILSMSATF LHHASPAAIP NAFAVSLSGP QGQIVGGFVA GRLLAAGTVF
201: VIAASFNNPS YHRLSSEEEA QNNSGGGAGD AQSPPVSGGG LESGHVPAES FMYSCHLPSD VIWAPTPRPP F

Best Arabidopsis Sequence Match ( AT5G49700.1 )
(BLAST)

001: MKGEYREQKS NEMFSKLPHH QQQQQQQQQQ HSLTSHFHLS STVTPTVDDS SIEVVRRPRG RPPGSKNKPK PPVFVTRDTD PPMSPYILEV PSGNDVVEAI
101: NRFCRRKSIG VCVLSGSGSV ANVTLRQPSP AALGSTITFH GKFDLLSVSA TFLPPPPRTS LSPPVSNFFT VSLAGPQGQI IGGFVAGPLI SAGTVYVIAA
201: SFNNPSYHRL PAEEEQKHSA GTGEREGQSP PVSGGGEESG QMAGSGGESC GVSMYSCHMG GSDVIWAPTA RAPPPY

Arabidopsis Description

AHL17AT-hook motif nuclear-localized protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.