Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21451 | Canola | cytosol | 78.99 | 88.98 |
| CDX83182 | Canola | cytosol | 78.99 | 88.98 |
| Bra000593.1-P | Field mustard | cytosol | 83.7 | 87.83 |
| AT1G14490.2 | Thale cress | plastid | 64.86 | 79.56 |
| KRH62181 | Soybean | nucleus | 61.59 | 60.71 |
| KRH52892 | Soybean | nucleus | 61.59 | 59.86 |
| KRH72453 | Soybean | nucleus | 55.43 | 56.46 |
| PGSC0003DMT400024250 | Potato | cytosol, plastid | 51.45 | 52.79 |
| GSMUA_Achr7P19000_001 | Banana | cytosol, plasma membrane, plastid | 35.14 | 52.15 |
| VIT_18s0001g07380.t01 | Wine grape | nucleus | 46.01 | 51.84 |
| KRH16838 | Soybean | nucleus | 47.83 | 51.56 |
| Solyc12g087950.1.1 | Tomato | nucleus | 46.74 | 48.5 |
| Solyc04g076220.2.1 | Tomato | nucleus | 58.33 | 47.92 |
| PGSC0003DMT400005182 | Potato | nucleus | 45.65 | 47.01 |
| GSMUA_Achr8P23410_001 | Banana | cytosol | 33.33 | 44.88 |
| GSMUA_Achr10P... | Banana | nucleus | 44.93 | 44.44 |
| GSMUA_Achr3P06770_001 | Banana | cytosol | 34.06 | 41.41 |
| AT4G14465.1 | Thale cress | cytosol, nucleus, plastid | 38.41 | 37.72 |
| Os09t0464300-00 | Rice | nucleus | 43.84 | 36.23 |
| AT2G35270.1 | Thale cress | nucleus | 35.51 | 34.39 |
| TraesCS5D01G252500.1 | Wheat | cytosol | 41.67 | 34.33 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.67 | 34.33 |
| TraesCS5B01G243200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 41.67 | 34.23 |
| AT3G55560.1 | Thale cress | plastid | 38.41 | 34.19 |
| Zm00001d020768_P001 | Maize | cytosol | 40.94 | 33.93 |
| Zm00001d005923_P001 | Maize | nucleus | 42.03 | 33.72 |
| TraesCS5A01G245800.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 41.3 | 33.53 |
| AT4G35390.1 | Thale cress | cytosol | 36.23 | 33.44 |
| AT4G17800.1 | Thale cress | cytosol | 35.14 | 33.22 |
| AT3G60870.1 | Thale cress | nucleus | 31.52 | 32.83 |
| AT3G04570.1 | Thale cress | cytosol, mitochondrion, peroxisome | 37.32 | 32.7 |
| AT2G42940.1 | Thale cress | plastid | 29.35 | 31.52 |
| OQU89633 | Sorghum | cytosol | 40.22 | 31.36 |
| KXG25333 | Sorghum | cytosol | 37.68 | 31.23 |
| AT1G20900.1 | Thale cress | nucleus | 35.14 | 31.19 |
| AT4G22810.1 | Thale cress | nucleus | 36.59 | 31.17 |
| Zm00001d031826_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 32.97 | 30.95 |
| AT1G76500.1 | Thale cress | nucleus | 33.7 | 30.79 |
| Os08t0478466-01 | Rice | nucleus | 35.51 | 30.25 |
| AT4G12050.1 | Thale cress | cytosol, nucleus, plastid | 35.51 | 28.91 |
| AT2G45430.1 | Thale cress | nucleus | 32.97 | 28.71 |
Protein Annotations
| Gene3D:3.30.1330.80 | MapMan:35.1 | EntrezGene:835033 | UniProt:A0A178UJ17 | ProteinID:AED95846.1 | InterPro:AT-hook_nuclear |
| ArrayExpress:AT5G49700 | EnsemblPlantsGene:AT5G49700 | RefSeq:AT5G49700 | TAIR:AT5G49700 | RefSeq:AT5G49700-TAIR-G | EnsemblPlants:AT5G49700.1 |
| TAIR:AT5G49700.1 | ProteinID:BAA98158.1 | ProteinID:BAH30621.1 | EMBL:BR000353 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003680 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005175 | RefSeq:NP_199781.1 | ProteinID:OAO93709.1 |
| PFAM:PF03479 | PIRSF:PIRSF016021 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0004507 | PO:PO:0009009 |
| InterPro:PPC_dom | PFscan:PS51742 | PANTHER:PTHR31100 | PANTHER:PTHR31100:SF1 | UniProt:Q9LTA2 | SUPFAM:SSF117856 |
| UniParc:UPI00000A55C2 | SEG:seg | : | : | : | : |
Description
AHL17AT-hook motif nuclear-localized protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA2]
Coordinates
chr5:+:20192159..20193800
Molecular Weight (calculated)
29391.6 Da
IEP (calculated)
8.341
GRAVY (calculated)
-0.445
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGEYREQKS NEMFSKLPHH QQQQQQQQQQ HSLTSHFHLS STVTPTVDDS SIEVVRRPRG RPPGSKNKPK PPVFVTRDTD PPMSPYILEV PSGNDVVEAI
101: NRFCRRKSIG VCVLSGSGSV ANVTLRQPSP AALGSTITFH GKFDLLSVSA TFLPPPPRTS LSPPVSNFFT VSLAGPQGQI IGGFVAGPLI SAGTVYVIAA
201: SFNNPSYHRL PAEEEQKHSA GTGEREGQSP PVSGGGEESG QMAGSGGESC GVSMYSCHMG GSDVIWAPTA RAPPPY
101: NRFCRRKSIG VCVLSGSGSV ANVTLRQPSP AALGSTITFH GKFDLLSVSA TFLPPPPRTS LSPPVSNFFT VSLAGPQGQI IGGFVAGPLI SAGTVYVIAA
201: SFNNPSYHRL PAEEEQKHSA GTGEREGQSP PVSGGGEESG QMAGSGGESC GVSMYSCHMG GSDVIWAPTA RAPPPY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.