Factsheet for AT4G22810.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82978	Canola	cytosol, nucleus, plastid	86.73	89.21
CDY41289	Canola	nucleus	86.42	88.89
Bra019355.1-P	Field mustard	nucleus	89.51	88.69
CDX94128	Canola	nucleus	89.2	88.38
CDX98771	Canola	nucleus	86.42	88.33
Bra013649.1-P	Field mustard	nucleus	88.58	88.04
AT4G12050.1	Thale cress	cytosol, nucleus, plastid	86.11	82.3
AT2G45430.1	Thale cress	nucleus	58.02	59.31
AT3G60870.1	Thale cress	nucleus	47.22	57.74
AT4G17800.1	Thale cress	cytosol	44.75	49.66
AT4G14465.1	Thale cress	cytosol, nucleus, plastid	42.9	49.47
Os06t0136900-01	Rice	nucleus	50.0	49.39
AT2G35270.1	Thale cress	nucleus	41.67	47.37
HORVU7Hr1G017700.2	Barley	nucleus	49.69	46.13
AT2G42940.1	Thale cress	plastid	36.11	45.53
TraesCS7D01G072200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	48.46	45.24
TraesCS7A01G076500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	47.84	44.8
Zm00001d045427_P001	Maize	cytosol, nucleus, plasma membrane	46.91	44.57
Zm00001d036088_P001	Maize	extracellular	38.27	44.29
TraesCS4A01G374700.1	Wheat	nucleus	47.53	43.75
AT3G04570.1	Thale cress	cytosol, mitochondrion, peroxisome	42.28	43.49
EER89149	Sorghum	cytosol, nucleus, plastid	46.6	43.27
AT4G35390.1	Thale cress	cytosol	38.27	41.47
AT1G20900.1	Thale cress	nucleus	38.58	40.19
AT3G55560.1	Thale cress	plastid	37.65	39.35
AT1G14490.2	Thale cress	plastid	26.85	38.67
AT1G76500.1	Thale cress	nucleus	35.49	38.08
AT5G49700.1	Thale cress	nucleus	31.17	36.59

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	EntrezGene:828380	UniProt:A0A178V625	EMBL:AB493693	ProteinID:AEE84660.1
EMBL:AK229321	EMBL:AK230322	InterPro:AT-hook_nuclear	ArrayExpress:AT4G22810	EnsemblPlantsGene:AT4G22810	RefSeq:AT4G22810
TAIR:AT4G22810	RefSeq:AT4G22810-TAIR-G	EnsemblPlants:AT4G22810.1	TAIR:AT4G22810.1	EMBL:BR000360	ProteinID:CAA16566.1
ProteinID:CAB79236.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR005175	RefSeq:NP_194012.1	UniProt:O49662	ProteinID:OAP00452.1	PFAM:PF03479	PIRSF:PIRSF016021
InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100	PANTHER:PTHR31100:SF15	SUPFAM:SSF117856	UniParc:UPI00000AB9D4
SEG:seg	:	:	:	:	:

Description

AHL24AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178V625]

Coordinates

chr4:+:11983974..11986016

Molecular Weight (calculated)

34341.2 Da

IEP (calculated)

6.797

GRAVY (calculated)

-0.652

Length

324 amino acids

Sequence
(BLAST)

001: MDPVQSHGSQ SSLPPPFHAR DFQLHLQQQQ QEFFLHHHQQ QRNQTDGDQQ GGSGGNRQIK MDREETSDNI DNIANNSGSE GKDIDIHGGS GEGGGGSGGD
101: HQMTRRPRGR PAGSKNKPKP PIIITRDSAN ALRTHVMEIG DGCDLVESVA TFARRRQRGV CVMSGTGNVT NVTIRQPGSH PSPGSVVSLH GRFEILSLSG
201: SFLPPPAPPT ATGLSVYLAG GQGQVVGGSV VGPLLCAGPV VVMAASFSNA AYERLPLEED EMQTPVHGGG GGGSLESPPM MGQQLQHQQQ AMSGHQGLPP
301: NLLGSVQLQQ QHDQSYWSTG RPPY

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.