Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS4A01G137900.1 | |
| TraesCS4B01G148100.1 | |
| TraesCS4D01G153300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G12050.1 | TraesCS4A01G137900.1 | AT4G26630.1 | 25387881 |
| AT4G12050.1 | TraesCS4B01G148100.1 | AT4G26630.1 | 25387881 |
| AT4G12050.1 | TraesCS4D01G153300.1 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G076500.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 97.73 | 99.42 |
| HORVU7Hr1G017700.2 | Barley | nucleus | 92.9 | 93.7 |
| Os06t0136900-01 | Rice | nucleus | 66.48 | 71.34 |
| Zm00001d045427_P001 | Maize | cytosol, nucleus, plasma membrane | 54.55 | 56.3 |
| EER89149 | Sorghum | cytosol, nucleus, plastid | 55.68 | 56.16 |
| Zm00001d036088_P001 | Maize | extracellular | 41.76 | 52.5 |
| TraesCS6A01G176200.1 | Wheat | nucleus | 43.18 | 49.19 |
| CDX82978 | Canola | cytosol, nucleus, plastid | 42.61 | 47.62 |
| AT4G22810.1 | Thale cress | nucleus | 43.75 | 47.53 |
| CDY41289 | Canola | nucleus | 42.33 | 47.3 |
| TraesCS7A01G299100.1 | Wheat | cytosol, nucleus, plastid | 38.07 | 47.18 |
| CDX98771 | Canola | nucleus | 42.33 | 47.0 |
| TraesCS4A01G094700.1 | Wheat | cytosol, nucleus, plastid | 33.81 | 46.48 |
| Bra019355.1-P | Field mustard | nucleus | 42.61 | 45.87 |
| CDX94128 | Canola | nucleus | 42.61 | 45.87 |
| AT4G12050.1 | Thale cress | cytosol, nucleus, plastid | 44.03 | 45.72 |
| Bra013649.1-P | Field mustard | nucleus | 42.33 | 45.71 |
| CDY04391 | Canola | nucleus | 42.33 | 45.57 |
| TraesCS6A01G053800.1 | Wheat | nucleus | 35.8 | 44.68 |
| TraesCS4A01G312400.1 | Wheat | nucleus | 36.08 | 44.56 |
| TraesCS2A01G449300.1 | Wheat | cytosol, nucleus, peroxisome | 38.64 | 43.17 |
| TraesCS6A01G399200.1 | Wheat | cytosol, extracellular, peroxisome | 35.23 | 42.76 |
| TraesCS6A01G277700.1 | Wheat | plastid | 39.2 | 42.2 |
| TraesCS3A01G167300.1 | Wheat | plastid | 24.72 | 40.85 |
| TraesCS1A01G043100.1 | Wheat | mitochondrion, nucleus | 36.93 | 40.12 |
| TraesCS7A01G225700.1 | Wheat | nucleus | 36.08 | 39.32 |
| TraesCS7A01G395400.1 | Wheat | cytosol | 31.25 | 38.06 |
| TraesCS3A01G490800.1 | Wheat | cytosol | 24.15 | 30.14 |
| TraesCS5A01G245800.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 27.56 | 28.53 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G374700.1 | EnsemblPlantsGene:TraesCS4A01G374700 | Gene3D:3.30.1330.80 | InterPro:AT-hook_nuclear | InterPro:IPR005175 | InterPro:PPC_dom |
| PANTHER:PTHR31100 | PANTHER:PTHR31100:SF2 | PFAM:PF03479 | PFscan:PS51742 | PIRSF:PIRSF016021 | SEG:seg |
| SUPFAM:SSF117856 | TIGR:cd11378 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr4A:+:649428109..649429167
Molecular Weight (calculated)
35776.9 Da
IEP (calculated)
7.080
GRAVY (calculated)
-0.373
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPVAAAAHG GGHHFGPPVG TFHPFHGHFP GQQRPLQQQH PAFQHFQDHH HQLLGGMLAK QELVDESNTT INSGGSNNGN SGGEGEQHMG GGGGGGGGGS
101: AQQQQQHAGG GGGEEGQQQQ QQALAVMRRP RGRPAGSKNK PKPPVIITRD SASALRAHVL EVAAGCDVVD CVAAFARRRQ VGVCVLSGTG AVANVSVRQP
201: GGAVATLAGC FDILSLSGSF LPPPAPPSAT GLTVYVSGGQ GQVVGGTVAG ALVASGPVVI MAASFGNASY ERLPLDDEEP SAAQGLAQAH SSPPPLPLPT
301: HQLQQQHQPS SSLAQAPDHH IPHNLMNGLQ QLPGDPYGWT TPGGSGGRVS PY
101: AQQQQQHAGG GGGEEGQQQQ QQALAVMRRP RGRPAGSKNK PKPPVIITRD SASALRAHVL EVAAGCDVVD CVAAFARRRQ VGVCVLSGTG AVANVSVRQP
201: GGAVATLAGC FDILSLSGSF LPPPAPPSAT GLTVYVSGGQ GQVVGGTVAG ALVASGPVVI MAASFGNASY ERLPLDDEEP SAAQGLAQAH SSPPPLPLPT
301: HQLQQQHQPS SSLAQAPDHH IPHNLMNGLQ QLPGDPYGWT TPGGSGGRVS PY
001: MDQVSRSLPP PFLSRDLHLH PHHQFQHQQQ QQQQNHGHDI DQHRIGGLKR DRDADIDPNE HSSAGKDQST PGSGGESGGG GGGDNHITRR PRGRPAGSKN
101: KPKPPIIITR DSANALKSHV MEVANGCDVM ESVTVFARRR QRGICVLSGN GAVTNVTIRQ PASVPGGGSS VVNLHGRFEI LSLSGSFLPP PAPPAASGLT
201: IYLAGGQGQV VGGSVVGPLM ASGPVVIMAA SFGNAAYERL PLEEDDQEEQ TAGAVANNID GNATMGGGTQ TQTQTQQQQQ QQLMQDPTSF IQGLPPNLMN
301: SVQLPAEAYW GTPRPSF
101: KPKPPIIITR DSANALKSHV MEVANGCDVM ESVTVFARRR QRGICVLSGN GAVTNVTIRQ PASVPGGGSS VVNLHGRFEI LSLSGSFLPP PAPPAASGLT
201: IYLAGGQGQV VGGSVVGPLM ASGPVVIMAA SFGNAAYERL PLEEDDQEEQ TAGAVANNID GNATMGGGTQ TQTQTQQQQQ QQLMQDPTSF IQGLPPNLMN
301: SVQLPAEAYW GTPRPSF
Arabidopsis Description
AHL22AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VXD2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.