Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d013757_P010 | |
| Zm00001d033159_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G12050.1 | Zm00001d013757_P010 | AT4G26630.1 | 25387881 |
| AT4G12050.1 | Zm00001d033159_P001 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER89149 | Sorghum | cytosol, nucleus, plastid | 83.28 | 81.38 |
| Zm00001d036088_P001 | Maize | extracellular | 53.96 | 65.71 |
| Os06t0136900-01 | Rice | nucleus | 56.3 | 58.54 |
| HORVU7Hr1G017700.2 | Barley | nucleus | 57.18 | 55.87 |
| TraesCS7A01G076500.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 56.6 | 55.78 |
| TraesCS7D01G072200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 56.6 | 55.62 |
| TraesCS4A01G374700.1 | Wheat | nucleus | 56.3 | 54.55 |
| Zm00001d024537_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 43.11 | 50.52 |
| Zm00001d049521_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome | 43.99 | 50.17 |
| Zm00001d016132_P001 | Maize | nucleus | 45.45 | 50.16 |
| Zm00001d018508_P001 | Maize | cytosol | 35.19 | 48.98 |
| Zm00001d053429_P001 | Maize | nucleus | 45.75 | 48.75 |
| Zm00001d031887_P001 | Maize | nucleus | 38.42 | 48.7 |
| Zm00001d049906_P001 | Maize | nucleus | 37.54 | 48.3 |
| AT4G22810.1 | Thale cress | nucleus | 44.57 | 46.91 |
| CDX82978 | Canola | cytosol, nucleus, plastid | 43.11 | 46.67 |
| CDX98771 | Canola | nucleus | 43.11 | 46.37 |
| CDY41289 | Canola | nucleus | 42.82 | 46.35 |
| Zm00001d002495_P001 | Maize | cytosol, nucleus, peroxisome | 41.94 | 46.28 |
| Zm00001d026035_P001 | Maize | cytosol, nucleus, peroxisome | 41.94 | 46.13 |
| AT4G12050.1 | Thale cress | cytosol, nucleus, plastid | 45.75 | 46.02 |
| Bra019355.1-P | Field mustard | nucleus | 43.7 | 45.57 |
| CDY04391 | Canola | nucleus | 43.4 | 45.26 |
| CDX94128 | Canola | nucleus | 43.4 | 45.26 |
| Zm00001d039249_P001 | Maize | cytosol | 20.53 | 45.16 |
| Bra013649.1-P | Field mustard | nucleus | 43.11 | 45.09 |
| Zm00001d051620_P001 | Maize | plastid | 41.64 | 44.8 |
| Zm00001d028577_P001 | Maize | nucleus | 35.19 | 43.96 |
| Zm00001d017825_P001 | Maize | plastid | 40.76 | 42.9 |
| Zm00001d046696_P001 | Maize | cytosol, nucleus, peroxisome | 34.02 | 42.8 |
| Zm00001d045928_P001 | Maize | nucleus | 36.66 | 40.85 |
| Zm00001d009031_P001 | Maize | mitochondrion, plastid | 22.87 | 38.42 |
| Zm00001d042060_P001 | Maize | plastid | 26.98 | 37.55 |
| Zm00001d031826_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 27.27 | 31.63 |
| Zm00001d020768_P001 | Maize | cytosol | 30.5 | 31.23 |
| Zm00001d005923_P001 | Maize | nucleus | 30.21 | 29.94 |
Protein Annotations
| EMBL:BT060685 | EMBL:JF309450 | EnsemblPlants:Zm00001d045427_P001 | EnsemblPlants:Zm00001d045427_T001 | EnsemblPlantsGene:Zm00001d045427 | EntrezGene:100304287 |
| Gene3D:3.30.1330.80 | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31100 | PANTHER:PTHR31100:SF2 | PFAM:PF03479 |
| PFscan:PS51742 | ProteinID:AQL02251.1 | SEG:seg | SUPFAM:SSF117856 | UniParc:UPI0001948A61 | UniProt:C0HEC9 |
| MapMan:35.1 | : | : | : | : | : |
Description
barren stalk fastigiate1 barren stalk fastigiate1
Coordinates
chr9:+:21786350..21787375
Molecular Weight (calculated)
34599.8 Da
IEP (calculated)
6.961
GRAVY (calculated)
-0.277
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPVAAAHGG GHHFAPPVAP FHHAFGGGHH LFPGQQHPAF QHFQEHQLEL MGGVPAGAKQ ELGDDSNNTI NSAGSNGSGD GDQQQQQQQA GGDVDNHHQH
101: HHHQQAAVMR RPRGRPAGSK NKPKPPVIIT RDSASALRAH VLEVAAGCDV VDSVAGFARR RQVGVCVLSG AGSVANVCVR QPGAGAGAVT LPGRFEILSL
201: CGSFLPPPAP PAATGLTVYL SGGQGQVVGG SVAGPLLASG PVVIVAACFG NAAYERLPLD DDDLPQQQQH LPPPPPIPQG MPGAAGAGGQ SSSPPPPPLP
301: LPGQHPLADQ LPHGLINGLP LPADAYGWAN PGGGAGRVAP Y
101: HHHQQAAVMR RPRGRPAGSK NKPKPPVIIT RDSASALRAH VLEVAAGCDV VDSVAGFARR RQVGVCVLSG AGSVANVCVR QPGAGAGAVT LPGRFEILSL
201: CGSFLPPPAP PAATGLTVYL SGGQGQVVGG SVAGPLLASG PVVIVAACFG NAAYERLPLD DDDLPQQQQH LPPPPPIPQG MPGAAGAGGQ SSSPPPPPLP
301: LPGQHPLADQ LPHGLINGLP LPADAYGWAN PGGGAGRVAP Y
001: MAGLDLGTTS RYVHNVDGGG GGQFTTDNHH EDDGGAGGNH HHHHHNHNHH QGLDLIASND NSGLGGGGGG GSGDLVMRRP RGRPAGSKNK PKPPVIVTRE
101: SANTLRAHIL EVGSGCDVFE CISTYARRRQ RGICVLSGTG TVTNVSIRQP TAAGAVVTLR GTFEILSLSG SFLPPPAPPG ATSLTIFLAG AQGQVVGGNV
201: VGELMAAGPV MVMAASFTNV AYERLPLDEH EEHLQSGGGG GGGNMYSEAT GGGGGLPFFN LPMSMPQIGV ESWQGNHAGA GRAPF
101: SANTLRAHIL EVGSGCDVFE CISTYARRRQ RGICVLSGTG TVTNVSIRQP TAAGAVVTLR GTFEILSLSG SFLPPPAPPG ATSLTIFLAG AQGQVVGGNV
201: VGELMAAGPV MVMAASFTNV AYERLPLDEH EEHLQSGGGG GGGNMYSEAT GGGGGLPFFN LPMSMPQIGV ESWQGNHAGA GRAPF
Arabidopsis Description
AHL21AT-hook motif nuclear-localized protein 21 [Source:UniProtKB/Swiss-Prot;Acc:O82166]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.