Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G035250.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G12050.1 | HORVU4Hr1G035250.1 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G072200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 93.98 | 94.52 |
| TraesCS7A01G076500.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 93.7 | 94.51 |
| TraesCS4A01G374700.1 | Wheat | nucleus | 93.7 | 92.9 |
| Os06t0136900-01 | Rice | nucleus | 66.76 | 71.04 |
| Zm00001d045427_P001 | Maize | cytosol, nucleus, plasma membrane | 55.87 | 57.18 |
| EER89149 | Sorghum | cytosol, nucleus, plastid | 55.87 | 55.87 |
| Zm00001d036088_P001 | Maize | extracellular | 42.12 | 52.5 |
| CDX82978 | Canola | cytosol, nucleus, plastid | 45.56 | 50.48 |
| HORVU6Hr1G037640.1 | Barley | nucleus | 44.41 | 50.16 |
| HORVU6Hr1G037630.1 | Barley | nucleus | 44.41 | 50.16 |
| CDY41289 | Canola | nucleus | 45.27 | 50.16 |
| AT4G22810.1 | Thale cress | nucleus | 46.13 | 49.69 |
| CDX98771 | Canola | nucleus | 44.99 | 49.53 |
| Bra013649.1-P | Field mustard | nucleus | 45.27 | 48.47 |
| AT4G12050.1 | Thale cress | cytosol, nucleus, plastid | 46.99 | 48.38 |
| Bra019355.1-P | Field mustard | nucleus | 45.27 | 48.32 |
| CDX94128 | Canola | nucleus | 45.27 | 48.32 |
| CDY04391 | Canola | nucleus | 44.41 | 47.4 |
| HORVU7Hr1G070490.2 | Barley | cytosol, mitochondrion, peroxisome | 38.97 | 47.22 |
| HORVU4Hr1G060280.1 | Barley | cytosol, nucleus, plastid | 34.38 | 46.88 |
| HORVU6Hr1G010470.2 | Barley | cytosol, nucleus, peroxisome | 37.25 | 46.26 |
| HORVU4Hr1G000870.2 | Barley | nucleus | 36.39 | 44.25 |
| HORVU7Hr1G020390.1 | Barley | mitochondrion | 23.78 | 43.92 |
| HORVU6Hr1G091740.1 | Barley | cytosol | 36.68 | 43.84 |
| HORVU4Hr1G015750.1 | Barley | mitochondrion | 34.67 | 43.53 |
| HORVU6Hr1G070090.1 | Barley | plastid | 40.97 | 43.2 |
| HORVU7Hr1G046930.1 | Barley | cytosol, nucleus, peroxisome | 38.68 | 42.72 |
| HORVU3Hr1G033710.2 | Barley | plastid | 24.64 | 40.38 |
| HORVU1Hr1G008650.1 | Barley | mitochondrion, nucleus, peroxisome | 37.25 | 40.37 |
| HORVU7Hr1G093230.2 | Barley | cytosol | 31.23 | 35.97 |
| HORVU0Hr1G011700.1 | Barley | cytosol | 19.77 | 31.94 |
| HORVU3Hr1G108820.1 | Barley | mitochondrion | 19.48 | 26.56 |
Protein Annotations
| Gene3D:3.30.1330.80 | MapMan:35.1 | InterPro:AT-hook_nuclear | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003680 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU7Hr1G017700 | EnsemblPlants:HORVU7Hr1G017700.2 | InterPro:IPR005175 | UniProt:M0YBQ5 |
| PFAM:PF03479 | PIRSF:PIRSF016021 | InterPro:PPC_dom | PFscan:PS51742 | PANTHER:PTHR31100 | PANTHER:PTHR31100:SF2 |
| SUPFAM:SSF117856 | UniParc:UPI000294F6EB | SEG:seg | : | : | : |
Description
AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:M0YBQ5]
Coordinates
chrchr7H:+:22990637..22992313
Molecular Weight (calculated)
35497.5 Da
IEP (calculated)
6.964
GRAVY (calculated)
-0.365
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPVAAAAHG GGHHFGPPVG SFHPFHGHFP GQQPQQQQQQ QQQHPAFQHF QDHHHQLLGG MLAKQELVDE SNTTINSGGS NNGNSGGEGE QHMGGGGGGG
101: GSMQQHAGGG GGGEEGQLQQ QQQALAVMRR PRGRPAGSKN KPKPPVIITR DSASALRAHV LEVAAGCDVV DCVAAFARRR QVGVCVLSGT GAVANVSVRQ
201: PGGAVATLAG CFDILSLSGS FLPPPAPPSA TGLTVYVSGG QGQVVGGSVA GALVASGPVV IMAASFGNAS YERLPLDDEE PSAAQGLAQA HSSPPALPLP
301: THHQQQQPSS LAQTPDHHLP HNLLNGLQLP GDAYGWTTPG GTGGRVSPY
101: GSMQQHAGGG GGGEEGQLQQ QQQALAVMRR PRGRPAGSKN KPKPPVIITR DSASALRAHV LEVAAGCDVV DCVAAFARRR QVGVCVLSGT GAVANVSVRQ
201: PGGAVATLAG CFDILSLSGS FLPPPAPPSA TGLTVYVSGG QGQVVGGSVA GALVASGPVV IMAASFGNAS YERLPLDDEE PSAAQGLAQA HSSPPALPLP
301: THHQQQQPSS LAQTPDHHLP HNLLNGLQLP GDAYGWTTPG GTGGRVSPY
001: MDEVSRSHTP QFLSSDHQHY HHQNAGRQKR GREEEGVEPN NIGEDLATFP SGEENIKKRR PRGRPAGSKN KPKAPIIVTR DSANAFRCHV MEITNACDVM
101: ESLAVFARRR QRGVCVLTGN GAVTNVTVRQ PGGGVVSLHG RFEILSLSGS FLPPPAPPAA SGLKVYLAGG QGQVIGGSVV GPLTASSPVV VMAASFGNAS
201: YERLPLEEEE ETEREIDGNA ARAIGTQTQK QLMQDATSFI GSPSNLINSV SLPGEAYWGT QRPSF
101: ESLAVFARRR QRGVCVLTGN GAVTNVTVRQ PGGGVVSLHG RFEILSLSGS FLPPPAPPAA SGLKVYLAGG QGQVIGGSVV GPLTASSPVV VMAASFGNAS
201: YERLPLEEEE ETEREIDGNA ARAIGTQTQK QLMQDATSFI GSPSNLINSV SLPGEAYWGT QRPSF
Arabidopsis Description
AHL18AT-hook motif nuclear-localized protein 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZX7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.