Factsheet for TraesCS7D01G072200.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
endoplasmic reticulum 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	cytosol, endoplasmic reticulum, nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12050.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT4G12050.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT4G12050.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G076500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	97.41	97.69
HORVU7Hr1G017700.2	Barley	nucleus	94.52	93.98
Os06t0136900-01	Rice	nucleus	67.44	71.34
Zm00001d045427_P001	Maize	cytosol, nucleus, plasma membrane	55.62	56.6
EER89149	Sorghum	cytosol, nucleus, plastid	56.2	55.87
Zm00001d036088_P001	Maize	extracellular	42.07	52.14
TraesCS6D01G167600.1	Wheat	nucleus	43.8	49.19
CDX82978	Canola	cytosol, nucleus, plastid	44.09	48.57
AT4G22810.1	Thale cress	nucleus	45.24	48.46
CDY41289	Canola	nucleus	43.8	48.25
CDX98771	Canola	nucleus	43.8	47.95
TraesCS7D01G294700.1	Wheat	cytosol, nucleus, peroxisome	39.19	47.89
TraesCS4D01G210500.1	Wheat	cytosol, nucleus, plastid	34.58	46.88
Bra019355.1-P	Field mustard	nucleus	44.09	46.79
CDX94128	Canola	nucleus	44.09	46.79
Bra013649.1-P	Field mustard	nucleus	43.8	46.63
AT4G12050.1	Thale cress	cytosol, nucleus, plastid	45.53	46.61
CDY04391	Canola	nucleus	43.8	46.48
TraesCS6D01G055500.1	Wheat	cytosol	36.89	45.39
TraesCS4D01G001800.1	Wheat	nucleus	36.89	44.91
TraesCS6D01G383400.1	Wheat	cytosol, extracellular, peroxisome	36.31	43.45
TraesCS2D01G448700.1	Wheat	cytosol, nucleus, peroxisome	38.9	43.13
TraesCS6D01G258400.1	Wheat	plastid	40.63	42.86
TraesCS3D01G173400.1	Wheat	plastid	24.78	40.38
TraesCS7D01G228800.1	Wheat	nucleus	36.89	40.25
TraesCS1D01G043600.1	Wheat	mitochondrion	36.89	39.51
TraesCS5D01G252500.1	Wheat	cytosol	27.67	28.66
TraesCS3D01G496700.1	Wheat	cytosol	23.92	27.67
TraesCS5D01G199600.1	Wheat	plastid	30.55	20.35

Protein Annotations

EnsemblPlants:TraesCS7D01G072200.1	EnsemblPlantsGene:TraesCS7D01G072200	Gene3D:3.30.1330.80	InterPro:AT-hook_nuclear	InterPro:IPR005175	InterPro:PPC_dom
PANTHER:PTHR31100	PANTHER:PTHR31100:SF2	PFAM:PF03479	PFscan:PS51742	PIRSF:PIRSF016021	SEG:seg
SUPFAM:SSF117856	TIGR:cd11378	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr7D:+:42545851..42546894

Molecular Weight (calculated)

35133.1 Da

IEP (calculated)

6.904

GRAVY (calculated)

-0.343

Length

347 amino acids

Sequence
(BLAST)

001: MDPVAAAAHG GGHHFGPPVG TFHPFHGHFP GQQQPLQQHP AFQHFQDHHQ QLLGGMLAKQ ELVDESNTTI NSGGSNNGNS GGEGEQHMGG GGGGGGGSAQ
101: QQHGGGGGGE EGQQQQQALA VMRRPRGRPA GSKNKPKPPV IITRDSASAL RAHVLEVAAG CDVVDCVAAF ARRRQVGVCV LSGTGAVANV SVRQPGGAVA
201: TLAGCFDILS LSGSFLPPPA PPSATGLTVY VSGGQGQVVG GSVAGALVAS GPVVIMAASF GNASYERLPL DDEEPSAAQG LAQAHSSPPP LPLPTHQLQQ
301: QQQPSSSLAQ APDHHIPHNL MNGLQQLPGD PYGWTTPGGS GGRVSPY

Best Arabidopsis Sequence Match ( AT2G35270.1 )
(BLAST)

001: MAGLDLGTTS RYVHNVDGGG GGQFTTDNHH EDDGGAGGNH HHHHHNHNHH QGLDLIASND NSGLGGGGGG GSGDLVMRRP RGRPAGSKNK PKPPVIVTRE
101: SANTLRAHIL EVGSGCDVFE CISTYARRRQ RGICVLSGTG TVTNVSIRQP TAAGAVVTLR GTFEILSLSG SFLPPPAPPG ATSLTIFLAG AQGQVVGGNV
201: VGELMAAGPV MVMAASFTNV AYERLPLDEH EEHLQSGGGG GGGNMYSEAT GGGGGLPFFN LPMSMPQIGV ESWQGNHAGA GRAPF

Arabidopsis Description

AHL21AT-hook motif nuclear-localized protein 21 [Source:UniProtKB/Swiss-Prot;Acc:O82166]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.