Factsheet for Zm00001d009031_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039249_P001	Maize	cytosol	59.11	77.42
TraesCS3B01G198900.1	Wheat	plastid	64.53	62.38
TraesCS3A01G167300.1	Wheat	plastid	65.02	61.97
TraesCS3D01G173400.1	Wheat	plastid	65.02	61.97
HORVU3Hr1G033710.2	Barley	plastid	65.02	61.97
Os01t0246601-00	Rice	plastid	62.07	55.26
Zm00001d049906_P001	Maize	nucleus	40.89	31.32
Zm00001d031887_P001	Maize	nucleus	40.89	30.86
Zm00001d018508_P001	Maize	cytosol	35.96	29.8
Zm00001d024537_P001	Maize	cytosol, endoplasmic reticulum, nucleus	41.87	29.21
Zm00001d049521_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	40.89	27.76
Zm00001d046696_P001	Maize	cytosol, nucleus, peroxisome	36.95	27.68
Zm00001d028577_P001	Maize	nucleus	36.95	27.47
Zm00001d036088_P001	Maize	extracellular	35.96	26.07
Zm00001d026035_P001	Maize	cytosol, nucleus, peroxisome	39.41	25.81
Zm00001d016132_P001	Maize	nucleus	38.92	25.57
Zm00001d002495_P001	Maize	cytosol, nucleus, peroxisome	38.92	25.57
Zm00001d042060_P001	Maize	plastid	30.54	25.31
Zm00001d053429_P001	Maize	nucleus	39.41	25.0
Zm00001d051620_P001	Maize	plastid	38.42	24.61
Zm00001d017825_P001	Maize	plastid	37.93	23.77
Zm00001d045928_P001	Maize	nucleus	34.98	23.2
Zm00001d045427_P001	Maize	cytosol, nucleus, plasma membrane	38.42	22.87
Zm00001d031826_P001	Maize	cytosol, endoplasmic reticulum, nucleus	32.02	22.11
Zm00001d020768_P001	Maize	cytosol	32.02	19.52
Zm00001d005923_P001	Maize	nucleus	30.54	18.02

Protein Annotations

EMBL:EU968971	EnsemblPlants:Zm00001d009031_P001	EnsemblPlants:Zm00001d009031_T001	EnsemblPlantsGene:Zm00001d009031	EntrezGene:100284596	Gene3D:3.30.1330.80
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31100
PANTHER:PTHR31100:SF11	PFAM:PF03479	PFscan:PS51742	ProteinID:AQK91231.1	SEG:seg	SUPFAM:SSF117856
TMHMM:TMhelix	UniParc:UPI000182E10E	UniProt:B6TVF6	MapMan:35.2	:	:

Description

DNA binding protein

Coordinates

chr8:-:30792216..30792827

Molecular Weight (calculated)

20677.2 Da

IEP (calculated)

10.079

GRAVY (calculated)

0.263

Length

203 amino acids

Sequence
(BLAST)

001: MAAASWRTGH QLPRRPAPCS KQNRTTSNSK PPVVIAHECP SAMRAHVVEV PAGRDVLSCV SAFARRGRRG ALVLGAAGQV TDVVLREPAA LVLRGTMEIL
101: SLAGCFFPFP APATGTAVFL AGPRGSVLGG GVALGGLVAA GPVVVMVATF VAAALDRLPL GNKGCDDVHA MDTTGRAAGP GRQCAESTSS VANKDPFLPA
201: ALY

Best Arabidopsis Sequence Match ( AT2G35270.1 )
(BLAST)

001: MAGLDLGTTS RYVHNVDGGG GGQFTTDNHH EDDGGAGGNH HHHHHNHNHH QGLDLIASND NSGLGGGGGG GSGDLVMRRP RGRPAGSKNK PKPPVIVTRE
101: SANTLRAHIL EVGSGCDVFE CISTYARRRQ RGICVLSGTG TVTNVSIRQP TAAGAVVTLR GTFEILSLSG SFLPPPAPPG ATSLTIFLAG AQGQVVGGNV
201: VGELMAAGPV MVMAASFTNV AYERLPLDEH EEHLQSGGGG GGGNMYSEAT GGGGGLPFFN LPMSMPQIGV ESWQGNHAGA GRAPF

Arabidopsis Description

AHL21AT-hook motif nuclear-localized protein 21 [Source:UniProtKB/Swiss-Prot;Acc:O82166]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.