Factsheet for VIT_15s0045g01130.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00993	Soybean	nucleus	58.13	53.36
KRH40225	Soybean	nucleus	57.32	52.22
VIT_02s0012g00880.t01	Wine grape	cytosol	59.76	52.13
Solyc01g080960.2.1	Tomato	nucleus	53.25	49.43
PGSC0003DMT400004515	Potato	nucleus	43.5	47.77
Os04t0590200-01	Rice	cytosol	57.72	46.56
EES12751	Sorghum	cytosol, nucleus, peroxisome	57.72	45.51
VIT_05s0049g00100.t01	Wine grape	cytosol	47.97	45.38
Zm00001d002495_P001	Maize	cytosol, nucleus, peroxisome	56.91	45.31
Zm00001d026035_P001	Maize	cytosol, nucleus, peroxisome	56.5	44.84
TraesCS2D01G448700.1	Wheat	cytosol, nucleus, peroxisome	56.5	44.41
TraesCS2B01G470600.1	Wheat	cytosol, nucleus, peroxisome	56.5	44.41
TraesCS2A01G449300.1	Wheat	cytosol, nucleus, peroxisome	56.1	43.81
VIT_12s0028g00070.t01	Wine grape	cytoskeleton, cytosol, plastid	46.75	42.91
VIT_03s0038g04110.t01	Wine grape	nucleus	48.78	41.52
VIT_14s0081g00670.t01	Wine grape	mitochondrion	48.37	40.89
VIT_02s0025g05100.t01	Wine grape	nucleus	48.78	39.74
VIT_15s0048g00780.t01	Wine grape	nucleus	47.97	39.33
VIT_13s0019g02080.t01	Wine grape	nucleus	49.19	37.0
VIT_18s0122g00590.t01	Wine grape	endoplasmic reticulum, plasma membrane	43.5	33.86
VIT_18s0001g07380.t01	Wine grape	nucleus	27.24	27.35

Protein Annotations

EntrezGene:100244733	wikigene:100244733	Gene3D:3.30.1330.80	MapMan:35.1	UniProt:A5C092	EMBL:AM477521
ProteinID:CAN61959	ProteinID:CAN61959.1	ProteinID:CCB60784	ProteinID:CCB60784.1	EMBL:FN596510	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175	EntrezGene:LOC100244733	wikigene:LOC100244733
PFAM:PF03479	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100	PANTHER:PTHR31100:SF14	SUPFAM:SSF117856
UniParc:UPI0001521F7E	ArrayExpress:VIT_15s0045g01130	EnsemblPlantsGene:VIT_15s0045g01130	EnsemblPlants:VIT_15s0045g01130.t01	RefSeq:XP_002265280	RefSeq:XP_002265280.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr15:+:6527086..6528008

Molecular Weight (calculated)

25626.5 Da

IEP (calculated)

5.925

GRAVY (calculated)

-0.153

Length

246 amino acids

Sequence
(BLAST)

001: MAGFPNGSPS SSPFHLHLHQ PQLNNLPEPP EPEKNEWNTA QFPCDGDVLA RRPRGRPPGS KNKPKPPVVI SRESTNTLRA HILEVGHGCD VFHSVAEYTE
101: KRRCGICILS GSGMVTDVSL RQPAAAGGAV AFLQGRFEIL SLSGSFLPRP APPGATSLTV FLAGSQGQVV GGSVVGGLTA CGPVVVIAAS FTDVAYDRVG
201: VDGEEGLLMQ PPEDESGGGC GLPLYNFPGI NNLMGGLVGM PDPNPN

Best Arabidopsis Sequence Match ( AT2G35270.1 )
(BLAST)

001: MAGLDLGTTS RYVHNVDGGG GGQFTTDNHH EDDGGAGGNH HHHHHNHNHH QGLDLIASND NSGLGGGGGG GSGDLVMRRP RGRPAGSKNK PKPPVIVTRE
101: SANTLRAHIL EVGSGCDVFE CISTYARRRQ RGICVLSGTG TVTNVSIRQP TAAGAVVTLR GTFEILSLSG SFLPPPAPPG ATSLTIFLAG AQGQVVGGNV
201: VGELMAAGPV MVMAASFTNV AYERLPLDEH EEHLQSGGGG GGGNMYSEAT GGGGGLPFFN LPMSMPQIGV ESWQGNHAGA GRAPF

Arabidopsis Description

AHL21AT-hook motif nuclear-localized protein 21 [Source:UniProtKB/Swiss-Prot;Acc:O82166]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.