CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002495_P001	Maize	cytosol, nucleus, peroxisome	96.47	97.41
Zm00001d026035_P001	Maize	cytosol, nucleus, peroxisome	94.87	95.48
Os04t0590200-01	Rice	cytosol	88.46	90.49
TraesCS2D01G448700.1	Wheat	cytosol, nucleus, peroxisome	83.97	83.71
TraesCS2B01G470600.1	Wheat	cytosol, nucleus, peroxisome	83.97	83.71
TraesCS2A01G449300.1	Wheat	cytosol, nucleus, peroxisome	83.65	82.86
KRH77205	Soybean	nucleus	56.73	70.8
KRH28289	Soybean	cytosol	56.41	70.4
KRH00993	Soybean	nucleus	59.62	69.4
KRH40225	Soybean	nucleus	58.65	67.78
Solyc01g080960.2.1	Tomato	nucleus	55.77	65.66
PGSC0003DMT400004515	Potato	nucleus	46.15	64.29
KXG24494	Sorghum	nucleus	58.65	61.41
VIT_15s0045g01130.t01	Wine grape	cytosol, plastid	45.51	57.72
KXG25365	Sorghum	nucleus	44.23	51.11
EES04848	Sorghum	nucleus	51.92	49.54
EES05630	Sorghum	cytosol, mitochondrion, nucleus, plastid	48.08	45.73
OQU85972	Sorghum	cytosol	42.31	44.44
KXG19929	Sorghum	nucleus	44.23	43.4
EER95114	Sorghum	nucleus	37.82	43.38
EER88668	Sorghum	cytosol	37.18	42.96
EER89149	Sorghum	cytosol, nucleus, plastid	44.55	39.83
EER99980	Sorghum	plastid	26.28	38.86
OQU88209	Sorghum	peroxisome	29.81	37.2
KXG25333	Sorghum	cytosol	32.37	30.33
OQU89633	Sorghum	cytosol	32.69	28.81

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	EntrezGene:8060466	UniProt:C5YEZ6	EnsemblPlants:EES12751	ProteinID:EES12751
ProteinID:EES12751.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175
PFAM:PF03479	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100	PANTHER:PTHR31100:SF14	EnsemblPlantsGene:SORBI_3006G197100
SUPFAM:SSF117856	unigene:Sbi.13857	UniParc:UPI0001A873C9	RefSeq:XP_002448423.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:54952131..54954631

Molecular Weight (calculated)

31206.6 Da

IEP (calculated)

6.677

GRAVY (calculated)

-0.281

Length

312 amino acids

Sequence
(BLAST)

001: MAGLDLGTAA TRYVHQLHHL HPDLQLQHSY AKQPEPSEDD PHGSGGGGGN SNNGGPYGEH DGGSSSSGPG AGDAPGGSGG NGEMVARRPR GRPPGSKNKP
101: KPPVIITRES ANTLRAHILE VGSGCDVFES VSTYARRRQR GVCVLSGSGV VTNVTLRQPS APTGAVVTLH GRFEILSLSG SFLPPPAPPG ATSLTIFLAG
201: GQGQVVGGNV VGALYAAGPV IVIAASFANV AYERLPLEEE EAQAAPPGLQ MQPPGGGVDG AGGGMGGGPF PPDPSAAGLP FFNLPLNNMA GGGSQLPPGA
301: DGHGWAGARP PF

Best Arabidopsis Sequence Match ( AT4G17800.1 )
(BLAST)

001: MAGLDLGTAF RYVNHQLHRP DLHLHHNSSS DDVTPGAGMG HFTVDDEDNN NNHQGLDLAS GGGSGSSGGG GGHGGGGDVV GRRPRGRPPG SKNKPKPPVI
101: ITRESANTLR AHILEVTNGC DVFDCVATYA RRRQRGICVL SGSGTVTNVS IRQPSAAGAV VTLQGTFEIL SLSGSFLPPP APPGATSLTI FLAGGQGQVV
201: GGSVVGELTA AGPVIVIAAS FTNVAYERLP LEEDEQQQQL GGGSNGGGNL FPEVAAGGGG GLPFFNLPMN MQPNVQLPVE GWPGNSGGRG PF

Arabidopsis Description

AHL23AT-hook motif nuclear-localized protein 23 [Source:UniProtKB/Swiss-Prot;Acc:O23620]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.