CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039249_P001	Maize	cytosol	66.82	90.97
TraesCS3B01G198900.1	Wheat	plastid	67.77	68.1
TraesCS3A01G167300.1	Wheat	plastid	68.25	67.61
TraesCS3D01G173400.1	Wheat	plastid	68.25	67.61
HORVU3Hr1G033710.2	Barley	plastid	67.77	67.14
Os01t0246601-00	Rice	plastid	63.51	58.77
KXG25365	Sorghum	nucleus	37.91	29.63
KXG24494	Sorghum	nucleus	39.81	28.19
EER88668	Sorghum	cytosol	34.6	27.04
EER95114	Sorghum	nucleus	34.6	26.84
OQU88209	Sorghum	peroxisome	31.28	26.4
EES12751	Sorghum	cytosol, nucleus, peroxisome	38.86	26.28
EES04848	Sorghum	nucleus	37.44	24.16
OQU85972	Sorghum	cytosol	33.18	23.57
EES05630	Sorghum	cytosol, mitochondrion, nucleus, plastid	36.02	23.17
KXG19929	Sorghum	nucleus	33.65	22.33
EER89149	Sorghum	cytosol, nucleus, plastid	35.07	21.2
KXG25333	Sorghum	cytosol	31.28	19.82
OQU89633	Sorghum	cytosol	30.81	18.36

Protein Annotations

MapMan:35.2	EntrezGene:8078067	InterPro:AT-hook_nuclear	UniProt:C5XJG8	EnsemblPlants:EER99980	ProteinID:EER99980
ProteinID:EER99980.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	InterPro:IPR005175	PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom
PFscan:PS51742	PANTHER:PTHR31100	PANTHER:PTHR31100:SF11	EnsemblPlantsGene:SORBI_3003G000700	SUPFAM:SSF117856	TMHMM:TMhelix
UniParc:UPI0001A84943	RefSeq:XP_002454861.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:82224..83322

Molecular Weight (calculated)

21565.2 Da

IEP (calculated)

10.850

GRAVY (calculated)

0.117

Length

211 amino acids

Sequence
(BLAST)

001: MATASASAMT GHEPQLPRRR PASSCPNSNS NSKQNRAKPP VVIAHECPSA MRAHVVEVPA GRDVLSCVSA FARRGRRGAL VLGAAGHVTD VVLREPALVL
101: RGTMEILSLA GCFFPFPGPG SAATGTAVFL AGPRGSVLGG GVALGGLVAA GPVVVMVATF VAAALDRLPL AKGAEEAAGK GCDEHAHHRH RACGWAAVMC
201: RKQRQQLGAN S

Best Arabidopsis Sequence Match ( AT2G42940.1 )
(BLAST)

001: MAGGTALTPT SVGSKSVPMR NHEATERGNT NNNLRALPKA VQPVSSIEGE MAKRPRGRPA GSKNKPKPPI IVTHDSPNSL RANAVEISSG CDICETLSDF
101: ARRKQRGLCI LSANGCVTNV TLRQPASSGA IVTLHGRYEI LSLLGSILPP PAPLGITGLT IYLAGPQGQV VGGGVVGGLI ASGPVVLMAA SFMNAVFDRL
201: PMDDDEAASM QNQQYYQNGR SRPLDDIHGL PQNLLTNGNS ASDIYSWGPA QRVMSKP

Arabidopsis Description

AHL16AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VQG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.