CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024537_P001	Maize	cytosol, endoplasmic reticulum, nucleus	89.6	91.75
Zm00001d049521_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	90.27	89.97
Os08t0159700-01	Rice	cytosol	85.23	87.89
TraesCS7A01G299100.1	Wheat	cytosol, nucleus, plastid	80.87	84.86
TraesCS7D01G294700.1	Wheat	cytosol, nucleus, peroxisome	80.87	84.86
TraesCS7B01G187300.1	Wheat	cytosol, nucleus, peroxisome	80.54	84.51
HORVU7Hr1G070490.2	Barley	cytosol, mitochondrion, peroxisome	79.53	82.29
GSMUA_Achr9P23390_001	Banana	plastid	58.05	68.11
GSMUA_Achr3P27580_001	Banana	cytosol, nucleus, plastid	50.34	59.76
EES12751	Sorghum	cytosol, nucleus, peroxisome	61.41	58.65
EES04848	Sorghum	nucleus	53.36	48.62
KXG25365	Sorghum	nucleus	42.95	47.41
EES05630	Sorghum	cytosol, mitochondrion, nucleus, plastid	48.32	43.9
EER95114	Sorghum	nucleus	39.93	43.75
OQU85972	Sorghum	cytosol	42.62	42.76
EER88668	Sorghum	cytosol	36.91	40.74
EER89149	Sorghum	cytosol, nucleus, plastid	47.65	40.69
EER99980	Sorghum	plastid	28.19	39.81
KXG19929	Sorghum	nucleus	41.95	39.31
OQU88209	Sorghum	peroxisome	32.21	38.4
KXG25333	Sorghum	cytosol	32.55	29.13
OQU89633	Sorghum	cytosol	33.22	27.97

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	UniProt:C5YHD2	ProteinID:EES14593.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175	EnsemblPlants:KXG24494	ProteinID:KXG24494	ProteinID:KXG24494.1
ProteinID:KXG24495.1	PFAM:PF03479	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100	PANTHER:PTHR31100:SF6
EnsemblPlantsGene:SORBI_3007G050200	SUPFAM:SSF117856	unigene:Sbi.8522	UniParc:UPI0001A87C53	RefSeq:XP_002445098.1	SEG:seg

Description

hypothetical protein

Coordinates

chr7:-:5061543..5063416

Molecular Weight (calculated)

29393.7 Da

IEP (calculated)

6.916

GRAVY (calculated)

-0.097

Length

298 amino acids

Sequence
(BLAST)

001: MAGLDLGTSS YLHQQHQHHH QVPLHLHHDD GVGAGGGGSD DGQDSLSPGS GGGGGGTPSS AGGAGIGGGE IVARRPRGRP PGSKNKPKPP VIITRESANA
101: LRAHILEVAA GCDVFEALTA YARRRQRGVC VLSAAGTVAN VTLRQPQSSQ TGPTSPAVAT LHGRFEILSL AGSFLPPPAP PGATSLAAFL AGGQGQVVGG
201: SVAGALIAAG PVVVVAASFS NVAYERLPLE DGDEVAPPPP AGGDQQQPGV PFDPAAAAAA GGLPFFNLPM GMPPMPMDGH AGWPAGAPGG GVGRPPFS

Best Arabidopsis Sequence Match ( AT2G35270.1 )
(BLAST)

001: MAGLDLGTTS RYVHNVDGGG GGQFTTDNHH EDDGGAGGNH HHHHHNHNHH QGLDLIASND NSGLGGGGGG GSGDLVMRRP RGRPAGSKNK PKPPVIVTRE
101: SANTLRAHIL EVGSGCDVFE CISTYARRRQ RGICVLSGTG TVTNVSIRQP TAAGAVVTLR GTFEILSLSG SFLPPPAPPG ATSLTIFLAG AQGQVVGGNV
201: VGELMAAGPV MVMAASFTNV AYERLPLDEH EEHLQSGGGG GGGNMYSEAT GGGGGLPFFN LPMSMPQIGV ESWQGNHAGA GRAPF

Arabidopsis Description

AHL21AT-hook motif nuclear-localized protein 21 [Source:UniProtKB/Swiss-Prot;Acc:O82166]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.