CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046696_P001	Maize	cytosol, nucleus, peroxisome	87.04	86.72
TraesCS7B01G297300.1	Wheat	cytosol	73.33	67.81
TraesCS7A01G395400.1	Wheat	cytosol	72.22	67.47
HORVU7Hr1G093230.2	Barley	cytosol	67.78	60.4
KRH51551	Soybean	plastid	33.7	44.61
GSMUA_Achr9P12320_001	Banana	plastid	44.81	43.06
KXG25365	Sorghum	nucleus	42.96	42.96
Solyc04g082810.2.1	Tomato	cytosol, nucleus, peroxisome	37.78	41.63
EES05630	Sorghum	cytosol, mitochondrion, nucleus, plastid	50.37	41.46
OQU85972	Sorghum	cytosol	43.7	39.73
PGSC0003DMT400025705	Potato	plastid	37.78	39.23
KXG19929	Sorghum	nucleus	44.44	37.74
CDY20404	Canola	nucleus	37.78	37.64
EES12751	Sorghum	cytosol, nucleus, peroxisome	42.96	37.18
CDX87591	Canola	nucleus	38.52	37.14
CDX88286	Canola	cytosol, endoplasmic reticulum, nucleus	37.78	36.96
KXG24494	Sorghum	nucleus	40.74	36.91
Bra015738.1-P	Field mustard	nucleus	38.89	36.46
CDX68095	Canola	cytosol	36.3	36.3
CDY45983	Canola	nucleus	38.52	36.11
EER95114	Sorghum	nucleus	35.93	35.66
CDX96613	Canola	nucleus	39.63	35.55
Bra003717.1-P	Field mustard	nucleus	37.78	35.54
Bra008262.1-P	Field mustard	nucleus	37.78	35.54
CDX85952	Canola	cytosol	35.56	35.29
VIT_18s0122g00590.t01	Wine grape	endoplasmic reticulum, plasma membrane	40.74	34.81
AT1G76500.1	Thale cress	nucleus	38.89	34.77
EER99980	Sorghum	plastid	27.04	34.6
CDY31511	Canola	nucleus	34.44	34.57
Bra016444.1-P	Field mustard	nucleus	40.0	34.29
EES04848	Sorghum	nucleus	41.48	34.25
AT1G20900.1	Thale cress	nucleus	39.26	34.08
Bra012256.1-P	Field mustard	nucleus	38.89	33.98
CDY29494	Canola	nucleus	34.07	33.58
OQU88209	Sorghum	peroxisome	30.74	33.2
CDY01347	Canola	nucleus	33.33	33.09
CDY33658	Canola	nucleus	35.56	32.88
EER89149	Sorghum	cytosol, nucleus, plastid	42.22	32.66
CDY31858	Canola	nucleus	32.96	32.6
Bra025854.1-P	Field mustard	nucleus	34.44	32.52
KXG25333	Sorghum	cytosol	32.22	26.13
OQU89633	Sorghum	cytosol	32.96	25.14

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	EntrezGene:8067670	UniProt:C5Z674	EnsemblPlants:EER88668	ProteinID:EER88668
ProteinID:EER88668.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175
PFAM:PF03479	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100	PANTHER:PTHR31100:SF20	EnsemblPlantsGene:SORBI_3010G196000
SUPFAM:SSF117856	UniParc:UPI0001A8947A	RefSeq:XP_002437301.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:+:53919038..53919850

Molecular Weight (calculated)

27399.7 Da

IEP (calculated)

8.492

GRAVY (calculated)

-0.145

Length

270 amino acids

Sequence
(BLAST)

001: MASSKWWEQA ALDFPSPQPH QAVPMPPALA PAVASPEGGG KQQQQPQQAG AGAAGAIVPL RRPRGRPLGS KNKPKPPVII TRDSPDALHS HVLEVAPGAD
101: VSACVAEYAR RRGRGVCVLG ASGAVGDVAV RGATAPLRGR FELLSVTGTV LPPPAPPEAS GLAVLVSAGQ GQVLGGCVVG PLVAAGPVTI FAATFANAVY
201: ERLPLADAPE LDVKPDLSTA TSAGGQDVQQ QQQQQPQLPM APSHQQPPAA MGAGGYADHR SPPYPWGGGV

Best Arabidopsis Sequence Match ( AT3G60870.1 )
(BLAST)

001: MDEVSRSHTP QFLSSDHQHY HHQNAGRQKR GREEEGVEPN NIGEDLATFP SGEENIKKRR PRGRPAGSKN KPKAPIIVTR DSANAFRCHV MEITNACDVM
101: ESLAVFARRR QRGVCVLTGN GAVTNVTVRQ PGGGVVSLHG RFEILSLSGS FLPPPAPPAA SGLKVYLAGG QGQVIGGSVV GPLTASSPVV VMAASFGNAS
201: YERLPLEEEE ETEREIDGNA ARAIGTQTQK QLMQDATSFI GSPSNLINSV SLPGEAYWGT QRPSF

Arabidopsis Description

AHL18AT-hook motif nuclear-localized protein 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZX7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.