Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d028577_P001 | Maize | nucleus | 93.01 | 92.67 |
| TraesCS4B01G209800.1 | Wheat | cytosol, nucleus, plastid | 81.99 | 87.11 |
| TraesCS4D01G210500.1 | Wheat | cytosol, nucleus, plastid | 81.62 | 86.72 |
| TraesCS4A01G094700.1 | Wheat | cytosol, nucleus, plastid | 81.25 | 86.33 |
| HORVU4Hr1G060280.1 | Barley | cytosol, nucleus, plastid | 81.25 | 86.33 |
| Os03t0270000-01 | Rice | nucleus | 81.62 | 86.05 |
| GSMUA_Achr5P28720_001 | Banana | mitochondrion, peroxisome, plastid | 52.21 | 54.2 |
| KRH73062 | Soybean | cytosol | 45.22 | 53.71 |
| KRH15076 | Soybean | nucleus | 33.82 | 52.87 |
| GSMUA_Achr11P... | Banana | nucleus | 54.78 | 50.68 |
| KRH31005 | Soybean | nucleus | 53.31 | 50.17 |
| GSMUA_Achr7P10630_001 | Banana | plastid | 52.21 | 48.8 |
| KXG25365 | Sorghum | nucleus | 48.16 | 48.52 |
| KRG97871 | Soybean | nucleus | 52.94 | 47.68 |
| GSMUA_Achr6P01060_001 | Banana | nucleus | 48.9 | 47.5 |
| GSMUA_Achr6P04980_001 | Banana | cytosol, nucleus, plastid | 49.63 | 47.04 |
| GSMUA_Achr9P28280_001 | Banana | plastid | 51.1 | 46.33 |
| AT3G55560.1 | Thale cress | plastid | 50.0 | 43.87 |
| CDY60321 | Canola | plastid | 47.43 | 43.58 |
| CDY68242 | Canola | plastid | 47.43 | 43.43 |
| OQU85972 | Sorghum | cytosol | 47.43 | 43.43 |
| GSMUA_Achr7P15000_001 | Banana | nucleus | 44.49 | 43.37 |
| Bra014735.1-P | Field mustard | plastid | 48.9 | 43.32 |
| CDX76085 | Canola | plastid | 48.9 | 43.32 |
| PGSC0003DMT400069792 | Potato | cytosol, nucleus, plastid | 50.0 | 43.31 |
| Bra007176.1-P | Field mustard | plastid | 47.06 | 43.1 |
| Bra003217.1-P | Field mustard | nucleus | 47.06 | 42.95 |
| CDY53687 | Canola | nucleus | 47.06 | 42.95 |
| CDY41211 | Canola | plastid | 46.32 | 42.71 |
| CDY02949 | Canola | plastid | 48.16 | 42.67 |
| VIT_13s0019g02080.t01 | Wine grape | nucleus | 51.1 | 42.51 |
| Solyc05g053000.1.1 | Tomato | nucleus | 48.9 | 42.49 |
| KXG24494 | Sorghum | nucleus | 43.75 | 39.93 |
| EES05630 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 47.06 | 39.02 |
| KXG19929 | Sorghum | nucleus | 44.85 | 38.36 |
| OQU88209 | Sorghum | peroxisome | 34.93 | 38.0 |
| EES12751 | Sorghum | cytosol, nucleus, peroxisome | 43.38 | 37.82 |
| EES04848 | Sorghum | nucleus | 44.12 | 36.7 |
| EER88668 | Sorghum | cytosol | 35.66 | 35.93 |
| EER99980 | Sorghum | plastid | 26.84 | 34.6 |
| EER89149 | Sorghum | cytosol, nucleus, plastid | 43.01 | 33.52 |
| KXG25333 | Sorghum | cytosol | 36.4 | 29.73 |
| OQU89633 | Sorghum | cytosol | 37.87 | 29.1 |
Protein Annotations
| Gene3D:3.30.1330.80 | MapMan:35.1 | EntrezGene:8084946 | InterPro:AT-hook_nuclear | UniProt:C5WQ24 | EnsemblPlants:EER95114 |
| ProteinID:EER95114 | ProteinID:EER95114.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003680 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045824 | InterPro:IPR005175 | PFAM:PF03479 | PIRSF:PIRSF016021 |
| InterPro:PPC_dom | PFscan:PS51742 | PANTHER:PTHR31100 | PANTHER:PTHR31100:SF40 | EnsemblPlantsGene:SORBI_3001G423800 | SUPFAM:SSF117856 |
| unigene:Sbi.5843 | UniParc:UPI0001A8313D | RefSeq:XP_002468116.1 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr1:-:70409884..70413075
Molecular Weight (calculated)
27319.0 Da
IEP (calculated)
7.041
GRAVY (calculated)
-0.290
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLDGHSLQ QGHHHGYAHS HVGAGPDSSG NNNNDEDDAS PPPAGAAAGG GGGPRRPRGR PPGSKNKPKP PVVVTRESPN AMRSHVLEIA SGADIVDAIA
101: GFSRRRQRGV SVLSGTGAVT NVTLRQPAGA GAAAIALRGR FEILSMSGAF LPAPAPPGAT GLAVYLAGGQ GQVVGGSVMG ELIASGPVMV IAATFGNATY
201: ERLPLEQDAE EGAVLSGSSE GGATAQQLEQ QQSSGGPVVP PSSMYAVPQT PPHDMFGQWG HAAVTRPPPT SF
101: GFSRRRQRGV SVLSGTGAVT NVTLRQPAGA GAAAIALRGR FEILSMSGAF LPAPAPPGAT GLAVYLAGGQ GQVVGGSVMG ELIASGPVMV IAATFGNATY
201: ERLPLEQDAE EGAVLSGSSE GGATAQQLEQ QQSSGGPVVP PSSMYAVPQT PPHDMFGQWG HAAVTRPPPT SF
001: MANPWWTNQS GLAGMVDHSV SSGHHQNHHH QSLLTKGDLG IAMNQSQDND QDEEDDPREG AVEVVNRRPR GRPPGSKNKP KAPIFVTRDS PNALRSHVLE
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y
Arabidopsis Description
AHL20AT-hook motif nuclear-localized protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWQ2]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.