Factsheet for GSMUA_Achr6P04980_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P28280_001	Banana	plastid	69.69	66.67
GSMUA_Achr6P01060_001	Banana	nucleus	62.37	63.93
GSMUA_Achr5P28720_001	Banana	mitochondrion, peroxisome, plastid	55.05	60.31
GSMUA_AchrUn_...	Banana	cytosol	32.4	55.69
GSMUA_Achr7P10630_001	Banana	plastid	54.01	53.26
GSMUA_Achr2P04080_001	Banana	cytosol	43.55	53.19
TraesCS4A01G094700.1	Wheat	cytosol, nucleus, plastid	47.39	53.12
HORVU4Hr1G060280.1	Barley	cytosol, nucleus, plastid	47.04	52.73
TraesCS4B01G209800.1	Wheat	cytosol, nucleus, plastid	47.04	52.73
TraesCS4D01G210500.1	Wheat	cytosol, nucleus, plastid	47.04	52.73
GSMUA_Achr11P...	Banana	nucleus	54.01	52.72
KRH73062	Soybean	cytosol	41.46	51.97
Os03t0270000-01	Rice	nucleus	46.69	51.94
GSMUA_Achr11P...	Banana	cytosol	31.01	51.74
KRH15076	Soybean	nucleus	31.01	51.15
EER95114	Sorghum	nucleus	47.04	49.63
Zm00001d028577_P001	Maize	nucleus	46.34	48.72
GSMUA_Achr5P19550_001	Banana	cytosol	44.95	47.78
KRH31005	Soybean	nucleus	48.08	47.75
GSMUA_Achr7P15000_001	Banana	nucleus	45.3	46.59
Solyc05g053000.1.1	Tomato	nucleus	49.83	45.69
PGSC0003DMT400069792	Potato	cytosol, nucleus, plastid	49.83	45.54
KRG97871	Soybean	nucleus	47.74	45.36
GSMUA_Achr9P23390_001	Banana	plastid	40.07	45.28
VIT_13s0019g02080.t01	Wine grape	nucleus	50.52	44.34
GSMUA_Achr1P19850_001	Banana	nucleus	46.69	43.65
GSMUA_Achr7P19000_001	Banana	cytosol, plasma membrane, plastid	27.87	43.01
GSMUA_Achr1P08290_001	Banana	nucleus	45.64	42.67
GSMUA_Achr10P...	Banana	cytosol, nucleus, vacuole	44.6	41.97
GSMUA_Achr2P03140_001	Banana	cytosol, nucleus, vacuole	44.95	41.75
CDY60321	Canola	plastid	42.51	41.22
CDY68242	Canola	plastid	42.16	40.74
CDY41211	Canola	plastid	41.81	40.68
GSMUA_Achr3P27580_001	Banana	cytosol, nucleus, plastid	35.54	40.64
Bra007176.1-P	Field mustard	plastid	41.81	40.4
Bra003217.1-P	Field mustard	nucleus	41.81	40.27
GSMUA_Achr9P12320_001	Banana	plastid	39.37	40.21
CDY02949	Canola	plastid	42.86	40.07
AT3G55560.1	Thale cress	plastid	43.21	40.0
CDY53687	Canola	nucleus	41.46	39.93
CDX76085	Canola	plastid	42.51	39.74
Bra014735.1-P	Field mustard	plastid	42.51	39.74
GSMUA_Achr8P14790_001	Banana	plastid	38.33	39.43
GSMUA_Achr5P03390_001	Banana	nucleus	35.19	39.0
GSMUA_Achr2P04780_001	Banana	cytosol, nucleus, plastid	34.49	38.82
GSMUA_Achr8P23410_001	Banana	cytosol	26.13	36.59
GSMUA_Achr10P...	Banana	nucleus	34.49	35.48
GSMUA_Achr3P06770_001	Banana	cytosol	25.44	32.16
GSMUA_Achr5P13920_001	Banana	nucleus	25.09	31.72
GSMUA_AchrUn_...	Banana	nucleus	34.84	29.85
GSMUA_Achr3P11300_001	Banana	nucleus	23.69	29.69

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr6G04980_001	EnsemblPlants:GSMUA_Achr6P04980_001	EnsemblPlants:GSMUA_Achr6T04980_001	InterPro:IPR005175
UniProt:M0T496	PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100
PANTHER:PTHR31100:SF13	SUPFAM:SSF117856	UniParc:UPI000294DEF0	SEG:seg	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G04980_001]

Coordinates

chr6:+:3398005..3398868

Molecular Weight (calculated)

30282.5 Da

IEP (calculated)

8.162

GRAVY (calculated)

-0.495

Length

287 amino acids

Sequence
(BLAST)

001: MEGVDHRVTP ASSNPPFHLC NPNSSDDHHN HRLRRRDREP KNAATAANSS SSNPQPCEDD DGNVKVHHGA TASDTTGQRH RGRPPGSKNK PKPPIIITRE
101: SPSALRSHVL EIASGADIMD AVATFARRRQ RGVCIMSGTG VVTNVTLRQP GAQRGVINLH GRFEILSLSG AFFPAPSPPG ATGLTLYVAG GQGQVVGGDV
201: VGELVASGTV MVIAATFSNA TYELLPLVEE EEPSTAAGQW QQSPRGNGGA PMPQNNLPPS VLPHGEIRHE VFGAWASAAP PRPPPSY

Best Arabidopsis Sequence Match ( AT1G76500.1 )
(BLAST)

001: MDGGYDQSGG ASRYFHNLFR PELHHQLQPQ PQLHPLPQPQ PQPQPQQQNS DDESDSNKDP GSDPVTSGST GKRPRGRPPG SKNKPKPPVI VTRDSPNVLR
101: SHVLEVSSGA DIVESVTTYA RRRGRGVSIL SGNGTVANVS LRQPATTAAH GANGGTGGVV ALHGRFEILS LTGTVLPPPA PPGSGGLSIF LSGVQGQVIG
201: GNVVAPLVAS GPVILMAASF SNATFERLPL EDEGGEGGEG GEVGEGGGGE GGPPPATSSS PPSGAGQGQL RGNMSGYDQF AGDPHLLGWG AAAAAAPPRP
301: AF

Arabidopsis Description

AHL29AT-hook motif nuclear-localized protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.