Factsheet for GSMUA_AchrUn_randomP07720_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P05900_001
GSMUA_Achr7P12530_001
GSMUA_Achr9P15630_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14465.1	GSMUA_Achr5P05900_001	AT3G17860.1	21798944
AT4G14465.1	GSMUA_Achr7P12530_001	AT3G17860.1	21798944
AT4G14465.1	GSMUA_Achr9P15630_001	AT3G17860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	67.66	65.7
GSMUA_Achr2P04080_001	Banana	cytosol	79.04	56.17
Os07t0235200-01	Rice	endoplasmic reticulum, extracellular	58.08	51.32
Zm00001d018508_P001	Maize	cytosol	72.46	49.39
Os08t0563200-01	Rice	cytosol	68.26	48.51
VIT_05s0049g00100.t01	Wine grape	cytosol	74.85	48.08
TraesCS4B01G001100.1	Wheat	cytosol, nucleus, peroxisome	71.86	48.0
Zm00001d049906_P001	Maize	nucleus	75.45	47.55
KXG25365	Sorghum	nucleus	76.65	47.41
Zm00001d031887_P001	Maize	nucleus	75.45	46.84
Os02t0820800-00	Rice	cytosol, nucleus, peroxisome	74.25	46.62
KRH31728	Soybean	cytosol	74.85	46.3
KRG90376	Soybean	nucleus	74.25	46.27
HORVU6Hr1G010470.2	Barley	cytosol, nucleus, peroxisome	72.46	43.06
GSMUA_Achr5P19550_001	Banana	cytosol	69.46	42.96
KRH34516	Soybean	cytosol, nucleus, peroxisome	74.25	42.76
TraesCS6A01G399200.1	Wheat	cytosol, extracellular, peroxisome	73.65	42.41
TraesCS6D01G383400.1	Wheat	cytosol, extracellular, peroxisome	73.65	42.41
TraesCS6B01G072300.1	Wheat	nucleus	71.26	42.2
HORVU4Hr1G000870.2	Barley	nucleus	72.46	42.16
HORVU6Hr1G091740.1	Barley	cytosol	73.65	42.12
TraesCS4A01G312400.1	Wheat	nucleus	71.86	42.11
TraesCS6B01G439500.1	Wheat	cytosol, extracellular, peroxisome	73.65	41.98
TraesCS6A01G053800.1	Wheat	nucleus	70.66	41.84
TraesCS4D01G001800.1	Wheat	nucleus	71.26	41.75
TraesCS6D01G055500.1	Wheat	cytosol	70.06	41.49
PGSC0003DMT400044451	Potato	nucleus	70.06	41.05
CDY23160	Canola	cytosol, nucleus, vacuole	68.26	40.86
OQU85972	Sorghum	cytosol	72.46	40.74
KRG92293	Soybean	cytosol, mitochondrion, nucleus	73.65	40.59
AT4G14465.1	Thale cress	cytosol, nucleus, plastid	68.26	40.57
Solyc09g089620.1.1	Tomato	nucleus	69.46	40.56
CDY12779	Canola	cytosol, nucleus, vacuole	67.66	40.07
GSMUA_Achr7P19000_001	Banana	cytosol, plasma membrane, plastid	44.31	39.78
GSMUA_Achr5P28720_001	Banana	mitochondrion, peroxisome, plastid	61.08	38.93
GSMUA_Achr9P23390_001	Banana	plastid	55.09	36.22
GSMUA_Achr8P23410_001	Banana	cytosol	44.31	36.1
GSMUA_Achr6P01060_001	Banana	nucleus	58.68	35.0
GSMUA_Achr7P10630_001	Banana	plastid	60.48	34.71
GSMUA_Achr10P...	Banana	cytosol, nucleus, vacuole	62.28	34.1
GSMUA_Achr11P...	Banana	nucleus	59.88	34.01
GSMUA_Achr9P12320_001	Banana	plastid	55.09	32.74
GSMUA_Achr8P14790_001	Banana	plastid	54.49	32.62
GSMUA_Achr6P04980_001	Banana	cytosol, nucleus, plastid	55.69	32.4
GSMUA_Achr2P03140_001	Banana	cytosol, nucleus, vacuole	59.28	32.04
GSMUA_Achr1P19850_001	Banana	nucleus	58.68	31.92
GSMUA_Achr9P28280_001	Banana	plastid	56.89	31.67
GSMUA_Achr1P08290_001	Banana	nucleus	57.48	31.27
GSMUA_Achr7P15000_001	Banana	nucleus	50.9	30.47
GSMUA_Achr3P06770_001	Banana	cytosol	40.12	29.52
GSMUA_Achr3P27580_001	Banana	cytosol, nucleus, plastid	43.71	29.08
GSMUA_Achr5P03390_001	Banana	nucleus	44.91	28.96
GSMUA_Achr2P04780_001	Banana	cytosol, nucleus, plastid	41.92	27.45
GSMUA_Achr10P...	Banana	nucleus	42.52	25.45
GSMUA_Achr5P13920_001	Banana	nucleus	29.34	21.59
GSMUA_AchrUn_...	Banana	nucleus	38.32	19.1
HORVU0Hr1G011700.1	Barley	cytosol	24.55	18.98
GSMUA_Achr3P11300_001	Banana	nucleus	23.95	17.47

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP07720_001	EnsemblPlants:GSMUA_AchrUn_randomT07720_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG07720_001	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom
PANTHER:PTHR31100	PANTHER:PTHR31100:SF3	PFAM:PF03479	PFscan:PS51742	SEG:seg	SUPFAM:SSF117856
UniParc:UPI0002951563	UniProt:M0U783	MapMan:35.1	:	:	:

Description

DNA binding protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG07720_001]

Coordinates

chrchrUn_random:-:32630326..32630901

Molecular Weight (calculated)

17047.5 Da

IEP (calculated)

6.510

GRAVY (calculated)

0.175

Length

167 amino acids

Sequence
(BLAST)

001: MEVSGGADVA DSIAQFARRR QRAVCVLSGS GTVVNVALRQ PAAPGAAVAL RGRFEILSVT GTFLPGPGPS PPGSTGLTVY LAGGQGQVVG GSVVGPLIAA
101: GPVMVMASTF ANATYERLPL VQEEEEGPDR LPDHSALPIL NLPPNLAPNV AHVGHEPFGW AHARAPF

Best Arabidopsis Sequence Match ( AT4G14465.1 )
(BLAST)

001: MANPWWTNQS GLAGMVDHSV SSGHHQNHHH QSLLTKGDLG IAMNQSQDND QDEEDDPREG AVEVVNRRPR GRPPGSKNKP KAPIFVTRDS PNALRSHVLE
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y

Arabidopsis Description

AHL20AT-hook motif nuclear-localized protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWQ2]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.