Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14465.1 | EER98873 | AT3G17860.1 | 21798944 |
| AT4G14465.1 | EES15016 | AT3G17860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d049906_P001 | Maize | nucleus | 94.07 | 95.85 |
| Zm00001d031887_P001 | Maize | nucleus | 91.11 | 91.45 |
| Os08t0563200-01 | Rice | cytosol | 72.22 | 82.98 |
| TraesCS4B01G001100.1 | Wheat | cytosol, nucleus, peroxisome | 71.48 | 77.2 |
| GSMUA_AchrUn_... | Banana | cytosol | 47.41 | 76.65 |
| GSMUA_Achr2P04080_001 | Banana | cytosol | 61.11 | 70.21 |
| GSMUA_Achr11P... | Banana | cytosol | 44.07 | 69.19 |
| TraesCS4A01G312400.1 | Wheat | nucleus | 72.96 | 69.12 |
| HORVU6Hr1G010470.2 | Barley | cytosol, nucleus, peroxisome | 71.85 | 69.04 |
| HORVU4Hr1G000870.2 | Barley | nucleus | 73.33 | 68.99 |
| TraesCS6A01G053800.1 | Wheat | nucleus | 71.48 | 68.44 |
| TraesCS6B01G072300.1 | Wheat | nucleus | 71.48 | 68.44 |
| TraesCS4D01G001800.1 | Wheat | nucleus | 72.22 | 68.42 |
| TraesCS6D01G055500.1 | Wheat | cytosol | 70.74 | 67.73 |
| Os07t0235200-01 | Rice | endoplasmic reticulum, extracellular | 45.56 | 65.08 |
| VIT_05s0049g00100.t01 | Wine grape | cytosol | 60.74 | 63.08 |
| KRG90376 | Soybean | nucleus | 62.59 | 63.06 |
| KRH31728 | Soybean | cytosol | 62.59 | 62.59 |
| GSMUA_Achr5P19550_001 | Banana | cytosol | 60.74 | 60.74 |
| OQU85972 | Sorghum | cytosol | 65.19 | 59.26 |
| KRH34516 | Soybean | cytosol, nucleus, peroxisome | 62.96 | 58.62 |
| Solyc09g089620.1.1 | Tomato | nucleus | 60.74 | 57.34 |
| PGSC0003DMT400044451 | Potato | nucleus | 60.37 | 57.19 |
| AT4G14465.1 | Thale cress | cytosol, nucleus, plastid | 58.89 | 56.58 |
| CDY23160 | Canola | cytosol, nucleus, vacuole | 58.15 | 56.27 |
| CDY12779 | Canola | cytosol, nucleus, vacuole | 58.15 | 55.67 |
| KRG92293 | Soybean | cytosol, mitochondrion, nucleus | 62.22 | 55.45 |
| EER95114 | Sorghum | nucleus | 48.52 | 48.16 |
| EES12751 | Sorghum | cytosol, nucleus, peroxisome | 51.11 | 44.23 |
| HORVU0Hr1G011700.1 | Barley | cytosol | 34.81 | 43.52 |
| EER88668 | Sorghum | cytosol | 42.96 | 42.96 |
| KXG24494 | Sorghum | nucleus | 47.41 | 42.95 |
| EES04848 | Sorghum | nucleus | 51.85 | 42.81 |
| EES05630 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 49.63 | 40.85 |
| KXG19929 | Sorghum | nucleus | 47.78 | 40.57 |
| EER99980 | Sorghum | plastid | 29.63 | 37.91 |
| EER89149 | Sorghum | cytosol, nucleus, plastid | 48.52 | 37.54 |
| OQU88209 | Sorghum | peroxisome | 33.7 | 36.4 |
| KXG25333 | Sorghum | cytosol | 38.52 | 31.23 |
| OQU89633 | Sorghum | cytosol | 35.19 | 26.84 |
Protein Annotations
| EnsemblPlants:KXG25365 | EnsemblPlantsGene:SORBI_3007G165400 | Gene3D:3.30.1330.80 | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31100 |
| PANTHER:PTHR31100:SF19 | PFAM:PF03479 | PFscan:PS51742 | ProteinID:KXG25365 | ProteinID:KXG25365.1 | SEG:seg |
| SUPFAM:SSF117856 | UniParc:UPI0003C67E91 | UniProt:A0A1B6PIE6 | MapMan:35.1 | : | : |
Description
hypothetical protein
Coordinates
chr7:+:60005750..60007130
Molecular Weight (calculated)
26813.0 Da
IEP (calculated)
7.679
GRAVY (calculated)
-0.183
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MALSSKDGGA TEQPTSGGSG DDRENGTGEP KEGAVVTGNR RPRGRPPGSK NKPKPPIFVT RDSPNALRSH VMEVAGGADV AESIAHFARR RQRGVCVLSG
101: AGTVTDVALR QPAAPGAVVA LRGRFEILSL TGTFLPGPAP PGSTGLTVYL AGGQGQVVGG SVVGTLTAAG PVMVMASTFA NATYERLPLD DAEEEPAGQA
201: PPPQLPPGPG GGPPLIMGGM ADPSAAMPMF GGSVGGVPPS LMPGGGAASG AGLQLGHEGL AWAHARPPPY
101: AGTVTDVALR QPAAPGAVVA LRGRFEILSL TGTFLPGPAP PGSTGLTVYL AGGQGQVVGG SVVGTLTAAG PVMVMASTFA NATYERLPLD DAEEEPAGQA
201: PPPQLPPGPG GGPPLIMGGM ADPSAAMPMF GGSVGGVPPS LMPGGGAASG AGLQLGHEGL AWAHARPPPY
001: MANPWWTNQS GLAGMVDHSV SSGHHQNHHH QSLLTKGDLG IAMNQSQDND QDEEDDPREG AVEVVNRRPR GRPPGSKNKP KAPIFVTRDS PNALRSHVLE
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y
Arabidopsis Description
AHL20AT-hook motif nuclear-localized protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWQ2]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.