CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017825_P001	Maize	plastid	95.43	96.6
TraesCS6D01G258400.1	Wheat	plastid	90.24	89.97
TraesCS6A01G277700.1	Wheat	plastid	89.02	89.3
TraesCS6B01G306100.1	Wheat	plastid	89.33	89.06
Os02t0713700-01	Rice	cytosol, mitochondrion, nucleus, plastid	91.16	88.99
HORVU6Hr1G070090.1	Barley	plastid	89.33	88.52
KXG19929	Sorghum	nucleus	67.07	69.18
GSMUA_Achr9P12320_001	Banana	plastid	58.54	68.33
Solyc04g082810.2.1	Tomato	cytosol, nucleus, peroxisome	45.12	60.41
PGSC0003DMT400025705	Potato	plastid	47.26	59.62
KRH51551	Soybean	plastid	35.98	57.84
CDX87591	Canola	nucleus	48.48	56.79
CDY20404	Canola	nucleus	46.34	56.09
CDX96613	Canola	nucleus	50.61	55.15
Bra015738.1-P	Field mustard	nucleus	48.17	54.86
CDY45983	Canola	nucleus	47.87	54.51
Bra008262.1-P	Field mustard	nucleus	47.26	54.01
CDX88286	Canola	cytosol, endoplasmic reticulum, nucleus	45.43	53.99
CDY31511	Canola	nucleus	43.9	53.53
AT1G20900.1	Thale cress	nucleus	50.61	53.38
Bra016444.1-P	Field mustard	nucleus	50.61	52.7
Bra012256.1-P	Field mustard	nucleus	49.39	52.43
CDY01347	Canola	nucleus	43.29	52.21
CDY33658	Canola	nucleus	46.04	51.71
CDY29494	Canola	nucleus	42.99	51.46
AT1G76500.1	Thale cress	nucleus	47.26	51.32
CDY31858	Canola	nucleus	42.68	51.28
Bra003717.1-P	Field mustard	nucleus	44.51	50.87
CDX68095	Canola	cytosol	41.77	50.74
EER88668	Sorghum	cytosol	41.46	50.37
Bra025854.1-P	Field mustard	nucleus	43.9	50.35
KXG25365	Sorghum	nucleus	40.85	49.63
CDX85952	Canola	cytosol	40.85	49.26
VIT_18s0122g00590.t01	Wine grape	endoplasmic reticulum, plasma membrane	46.95	48.73
KXG24494	Sorghum	nucleus	43.9	48.32
EES12751	Sorghum	cytosol, nucleus, peroxisome	45.73	48.08
EER95114	Sorghum	nucleus	39.02	47.06
OQU85972	Sorghum	cytosol	39.94	44.11
EES04848	Sorghum	nucleus	43.9	44.04
OQU88209	Sorghum	peroxisome	29.88	39.2
EER89149	Sorghum	cytosol, nucleus, plastid	40.85	38.4
EER99980	Sorghum	plastid	23.17	36.02
KXG25333	Sorghum	cytosol	32.62	32.13
OQU89633	Sorghum	cytosol	29.88	27.68

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	UniProt:C5XZX4	EnsemblPlants:EES05630	ProteinID:EES05630	ProteinID:EES05630.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175	ProteinID:KXG30888.1
PFAM:PF03479	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100	PANTHER:PTHR31100:SF5	EnsemblPlantsGene:SORBI_3004G262200
SUPFAM:SSF117856	UniParc:UPI0001A85D6D	RefSeq:XP_002452654.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:60728873..60734802

Molecular Weight (calculated)

32213.8 Da

IEP (calculated)

7.215

GRAVY (calculated)

-0.289

Length

328 amino acids

Sequence
(BLAST)

001: MPGMDPGGGG SSRYFHQLLR PQQQQQPSPL SPNSHVKMEH HHKMSPDKSP VGGEAEAGGS GGGGDQPSSS ALVPVEGGSG GGGGSGSGTP TRRPRGRPPG
101: SKNKPKPPII VTRDSPNALH SHVLEVAAGA DVVDCVAEYA RRRGRGVCVL SGGGAVVNVA LRQPGASPPG SMVATLRGRF EILSLTGTVL PPPAPPGASG
201: LTVFLSGGQG QVIGGSVVGP LVAAGPVVLM AASFANAVYE RLPLEGEEEE TAAAAAGAEP QDQVAQSAGP PGQQPTASQS SGVTGGGDAG GGGMSLYNLA
301: GNVGAYQLPG DNFGGWSGGG GGGVRPPF

Best Arabidopsis Sequence Match ( AT1G20900.1 )
(BLAST)

001: MEGGYEQGGG ASRYFHNLFR PEIHHQQLQP QGGINLIDQH HHQHQQHQQQ QQPSDDSRES DHSNKDHHQQ GRPDSDPNTS SSAPGKRPRG RPPGSKNKAK
101: PPIIVTRDSP NALRSHVLEV SPGADIVESV STYARRRGRG VSVLGGNGTV SNVTLRQPVT PGNGGGVSGG GGVVTLHGRF EILSLTGTVL PPPAPPGAGG
201: LSIFLAGGQG QVVGGSVVAP LIASAPVILM AASFSNAVFE RLPIEEEEEE GGGGGGGGGG GPPQMQQAPS ASPPSGVTGQ GQLGGNVGGY GFSGDPHLLG
301: WGAGTPSRPP F

Arabidopsis Description

AHL27AT-hook motif nuclear-localized protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7C9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.